Co-expression analysis

Gene ID	Zm.3135.1.S1_at
Gene name	catalytic/ protein phosphatase type 2C
Homology with Arabidopsis	Similar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13)
Module size	6 genes
NF	0.71
%ile	93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.3135.1.S1_at	CD981826	catalytic/ protein phosphatase type 2C	-	2e-13	At1g47380	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.16843.1.S1_at	AI978092	-	-	2e-47	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.13620.1.A1_at	CK369896	-	-	8e-6	At2g37550	AGD7	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1610161_at, orthologous to the query gene, Zm.3135.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	1610161_at	At1g47380	-	-	3e-16	At2g44620	MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1610129_at	At1g47380	-	-	2e-2	At5g10000	ATFD4 (ferredoxin 4)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611600_at	At1g47380	-	-	8e-18	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.37	51.7	1609051_at	At1g47380	-	-	4e-32	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612775_at	At1g47380	-	-	8e-27	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.32	43.1	1621365_at	At1g47380	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1608411_at	At1g47380	-	-	7e-1	At5g26640	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1615456_at	At1g47380	-	-	3e-1	At1g04635	EMB1687 (EMBRYO DEFECTIVE 1687)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1612824_at	At1g47380	-	-	3e+0	At3g28230	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	1616784_at	At1g47380	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1613291_at	At1g47380	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1608672_s_at	At1g47380	-	-	6e-33	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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