| Gene ID | Zm.3135.1.S1_at |
| Gene name | catalytic/ protein phosphatase type 2C |
| Homology with Arabidopsis | Similar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13) |
| Module size | 6 genes |
| NF | 0.71 |
| %ile | 93.0 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.77 | 92.1 | 0.97 | Zm.3135.1.S1_at | CD981826 | catalytic/ protein phosphatase type 2C | - | 2e-13 | At1g47380 | protein phosphatase 2C-related / PP2C-related | O.I. | H.G. | S.X. | |
| 0.83 | 95.6 | 0.98 | Zm.16843.1.S1_at | AI978092 | - | - | 2e-47 | At1g50370 | serine/threonine protein phosphatase, putative | O.I. | H.G. | S.X. | |
| 0.77 | 92.1 | 0.98 | Zm.17572.2.S1_at | CF972387 | heat- and acid-stable phosphoprotein | - | 3e-8 | At5g46020 | unknown protein | O.I. | H.G. | S.X. | |
| 0.67 | 85.8 | 0.98 | Zm.2163.1.S1_at | AY105593.1 | - | - | 2e-4 | At3g59400 | GUN4 | O.I. | H.G. | S.X. | |
| 0.60 | 77.8 | 0.98 | Zm.13620.1.A1_at | CK369896 | - | - | 8e-6 | At2g37550 | AGD7 | O.I. | H.G. | S.X. | |
| 0.42 | 51.3 | 0.98 | Zm.9984.1.A1_at | CO529085 | Hypothetical protein LOC100217031 | - | 4e-4 | At1g65000 | unknown protein | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 21.9 | 99.4 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 20.3 | 99.3 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 17.8 | 99.1 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 16.8 | 99.1 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 16.0 | 99.0 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 15.2 | 98.9 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 14.1 | 98.8 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 13.7 | 98.8 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 11.2 | 98.5 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.2 | 98.0 | GSM320457 | protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.75 | 91.9 | Os04g0449400 | At1g47380 | - | Calmodulin-binding protein phosphatase | 7e-5 | At1g09160 | protein phosphatase 2C-related / PP2C-related | O.I. | H.G. | S.X. | |
| 0.60 | 79.7 | Os02g0787800 | At1g47380 | - | Diacylglycerol kinase, catalytic region domaincontaining protein | 1e-12 | At2g18730 | diacylglycerol kinase, putative | O.I. | H.G. | S.X. | |
| 0.55 | 73.7 | Os07g0622000 | At1g47380 | - | Abscisic acid-inducible protein kinase (EC2.7.1.-) (Fragment) | 1e-39 | At4g33950 | OST1 (OPEN STOMATA 1) | O.I. | H.G. | S.X. | |
| 0.50 | 68.0 | Os03g0187600 | At1g47380 | - | GRAM domain containing protein | 6e-1 | At1g28200 | FIP1 (FH INTERACTING PROTEIN 1) | O.I. | H.G. | S.X. | |
| 0.48 | 63.7 | Os10g0574700 | At1g47380 | - | Protein of unknown function DUF597 family protein | 4e-2 | At4g17900 | zinc-binding family protein | O.I. | H.G. | S.X. | |
| 0.44 | 58.1 | Os04g0671100 | At1g47380 | - | Adenylate kinase family protein | 1e-4 | At2g39270 | adenylate kinase family protein | O.I. | H.G. | S.X. | |
| 0.38 | 46.9 | Os03g0703400 | At1g47380 | - | MAP3K beta 3 protein kinase (EC 2.7.1.37)(Fragment) | 8e-2 | At1g63700 | YDA (YODA) | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | Os12g0131100 | At1g47380 | - | Glucosamine--fructose-6-phosphate aminotransferase[isomerizing] (EC 2.6.1.16) (Hexosephosphateaminotransferase) (D-fructose-6- phosphateamidotransferase) (GFAT) | 3e-12 | At3g24090 | glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase | O.I. | H.G. | S.X. | |
| 0.32 | 36.3 | Os08g0480100 | At1g47380 | - | Signal recognition particle receptor protein(Fragment) | 1e-8 | At4g30600 | signal recognition particle receptor alpha subunit family protein | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | Os05g0427300 | At1g47380 | - | RNA-binding region RNP-1 (RNA recognition motif)domain containing protein | 1e-2 | At5g13050 | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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