Co-expression analysis

Gene ID	Zm.3135.1.S1_at
Gene name	catalytic/ protein phosphatase type 2C
Homology with Arabidopsis	Similar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13)
Module size	6 genes
NF	0.71
%ile	93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.3135.1.S1_at	CD981826	catalytic/ protein phosphatase type 2C	-	2e-13	At1g47380	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.16843.1.S1_at	AI978092	-	-	2e-47	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.13620.1.A1_at	CK369896	-	-	8e-6	At2g37550	AGD7	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig16753_at, orthologous to the query gene, Zm.3135.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig16753_at	At1g47380	-	-	1e+1	At5g04820	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig6157_s_at	At1g47380	-	-	2e+0	At5g54420	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	rbaal17b01_s_at	At1g47380	-	-	1e+0	At5g43080	CYCA3	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig16868_at	At1g47380	-	-	8e+0	At5g01360	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig11886_s_at	At1g47380	-	-	1e-4	At1g06700	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig16784_at	At1g47380	-	-	4e-1	At5g05100	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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