Co-expression analysis

Gene ID	Zm.3111.1.A1_at
Gene name	hypothetical protein LOC100191479
Homology with Arabidopsis	Similar to At5g25100: endomembrane protein 70, putative (HF=5e-51)
Module size	9 genes
NF	0.54
%ile	70.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.95	Zm.3111.1.A1_at	AY107180.1	hypothetical protein LOC100191479	-	5e-51	At5g25100	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.12352.1.S1_at	CF029529	-	-	1e+0	At1g78660	gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.17584.1.S1_at	CK369026	-	-	8e-5	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.96	Zm.1032.1.A1_at	BE552525	polyneuridine-aldehyde esterase	-	3e-5	At1g33990	MES14 (METHYL ESTERASE 14)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.2183.1.A1_at	BM335799	phospholipase/Carboxylesterase family protein	-	6e+0	At4g36640	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.7409.1.A1_at	CF042542	hypothetical protein LOC100191559	-	2e-1	At4g15790	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	ZmAffx.1086.1.A1_at	AW018229	-	-	3e+0	At2g01755	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.17564.1.S1_at	CK369792	AGG2	-	2e+0	At1g68585	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.13365.1.A1_at	CK827054	-	-	2e+0	At1g48440	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage