Co-expression analysis

Gene ID Zm.3083.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g08150: unknown protein (HF=3e-2)
Module size 6 genes
NF 0.24
%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.3083.1.A1_atAW091304--3e-2At5g08150unknown proteinO.I.H.G.S.X.
0.2724.60.99Zm.9636.1.A1_atBM349325--2e+1At5g6751060S ribosomal protein L26 (RPL26B)O.I.H.G.S.X.
0.2724.60.99Zm.11630.1.A1_atBM379429--4e+0At4g13570HTA4O.I.H.G.S.X.
0.2521.30.99Zm.5122.1.A1_atAY103900.1--4e+0At5g1520040S ribosomal protein S9 (RPS9B)O.I.H.G.S.X.
0.2216.90.99Zm.13606.1.A1_atAY107609.1hypothetical protein LOC100274041-5e+0At3g03776hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.136.80.99Zm.10513.2.S1_a_atAY106791.1hypothetical protein LOC100277818-3e-3At1g68390unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEg0016P19f_x_at, orthologous to the query gene, Zm.3083.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.6HVSMEg0016P19f_x_atAt5g08150--2e-2At2g36261unknown proteinO.I.H.G.S.X.
0.3747.9HVSMEm0004D09r2_atAt5g08150--3e-1At2g20500unknown proteinO.I.H.G.S.X.
0.3647.1Contig10018_atAt5g08150--3e-2At3g47300SELT (SELT-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.3443.6Contig11034_atAt5g08150--9e-12At3g53180catalytic/ glutamate-ammonia ligaseO.I.H.G.S.X.
0.3342.6EBro02_SQ006_H18_s_atAt5g08150--2e+0At1g36510-O.I.H.G.S.X.
0.3138.6Contig8816_atAt5g08150--4e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.3138.6HD08D07r_s_atAt5g08150--9e+0At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.3037.0Contig12452_atAt5g08150--1e-1At3g28956catalytic/ nucleotide bindingO.I.H.G.S.X.
0.3037.0HD05C22r_atAt5g08150--1e+0At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.3037.0Contig14066_atAt5g08150--1e-1At5g19151unknown proteinO.I.H.G.S.X.
0.2835.5Contig7648_atAt5g08150--6e-1At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.2630.4Contig7046_atAt5g08150--2e+0At2g21600ATRER1BO.I.H.G.S.X.
0.2630.4Contig19622_atAt5g08150--1e+0At3g60966protein binding / zinc ion bindingO.I.H.G.S.X.
0.2427.2Contig15111_atAt5g08150--2e-2At1g14150oxygen evolving enhancer 3 (PsbQ) family proteinO.I.H.G.S.X.
0.2326.1Contig12203_atAt5g08150--2e+0At5g09530hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2326.1Contig2937_s_atAt5g08150--9e-27At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.2326.1HVSMEg0018F23r2_atAt5g08150--1e+0At5g15480zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2224.2Contig3707_atAt5g08150--1e-23At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.2122.6Contig1549_s_atAt5g08150--2e-29At3g1095060S ribosomal protein L37a (RPL37aB)O.I.H.G.S.X.
0.2021.1Contig119_atAt5g08150--1e-6At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.2021.1Contig9154_atAt5g08150--7e-1At4g39340unknown proteinO.I.H.G.S.X.
0.2021.1rbah36k01_s_atAt5g08150--1e+0At3g04430anac049 (Arabidopsis NAC domain containing protein 49)O.I.H.G.S.X.
0.2021.1Contig10745_atAt5g08150--5e-1At5g43380TOPP6O.I.H.G.S.X.
0.1919.6Contig12495_atAt5g08150--4e-11At4g31790diphthine synthase, putative (DPH5)O.I.H.G.S.X.
0.1818.2Contig6926_atAt5g08150--2e-1At5g1552040S ribosomal protein S19 (RPS19B)O.I.H.G.S.X.
0.1716.9Contig10962_atAt5g08150--1e+0At4g27657unknown proteinO.I.H.G.S.X.
0.1716.9Contig8059_atAt5g08150--8e-18At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.1615.3Contig15062_atAt5g08150--1e-1At4g25440ZFWD1 (zinc finger WD40 repeat protein 1)O.I.H.G.S.X.
0.1514.1Contig10064_atAt5g08150--2e+0At2g12465LCR50 (Low-molecular-weight cysteine-rich 50)O.I.H.G.S.X.
0.1514.1HVSMEa0009I06r2_atAt5g08150--9e+0At5g59060unknown proteinO.I.H.G.S.X.
0.1514.1Contig3268_atAt5g08150--3e-30At3g2634020S proteasome beta subunit E, putativeO.I.H.G.S.X.
0.1514.1Contig7320_atAt5g08150--2e-1At1g26690emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.1514.1Contig9524_atAt5g08150--2e+0At1g31400meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.1210.4Contig9554_s_atAt5g08150--8e-8At4g01560MEE49 (maternal effect embryo arrest 49)O.I.H.G.S.X.
0.1210.4Contig10848_atAt5g08150--9e-9At3g43700ATBPM6 (BTB-POZ and MATH domain 6)O.I.H.G.S.X.
0.1210.4Contig13002_atAt5g08150--2e-10At1g45150unknown proteinO.I.H.G.S.X.
0.1210.4Contig10614_atAt5g08150--2e-13At5g13520peptidase M1 family proteinO.I.H.G.S.X.
0.119.4Contig26395_atAt5g08150--5e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage