Co-expression analysis

Gene ID Zm.3078.1.S1_at
Gene name hypothetical protein LOC100192566
Homology with ArabidopsisSimilar to At4g28181: unknown protein (HF=2e+0)
Module size 20 genes
NF 0.48
%ile 59.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7288.60.86Zm.3078.1.S1_atAW453293hypothetical protein LOC100192566-2e+0At4g28181unknown proteinO.I.H.G.S.X.
0.6179.50.91Zm.1549.1.A1_atAI612422BCAS2 protein-6e-1At3g22360AOX1BO.I.H.G.S.X.
0.6077.80.92Zm.2988.1.A1_atBM078271hypothetical protein LOC100280319-5e+0At5g44920Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.5775.10.93Zm.5707.1.S1_s_atCF631594gpm4 protein /// copper chaperone-3e-2At1g66240ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)O.I.H.G.S.X.
0.5674.40.91Zm.13966.2.S1_a_atCF632224hypothetical protein LOC100274039-4e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5571.60.93Zm.9472.1.A1_atCF006768hypothetical protein LOC100276276-6e-6At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5469.80.92Zm.18287.1.A1_atBG517659hypothetical protein LOC100193796-4e-32At5g36700PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)O.I.H.G.S.X.
0.5065.70.88Zm.7669.1.A1_atBM079429--1e+0At4g20810transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family proteinO.I.H.G.S.X.
0.5065.70.91ZmAffx.262.1.A1_s_atAI670379acidic ribosomal protein P3-3e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)O.I.H.G.S.X.
0.4658.40.92Zm.4133.1.A1_atAI855085--3e+0At5g44500small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeO.I.H.G.S.X.
0.4556.40.92Zm.13434.1.A1_atAW562937hypothetical protein LOC100192499-4e-12At5g56090COX15 (cytochrome c oxidase 15)O.I.H.G.S.X.
0.4352.80.94Zm.13594.1.S1_atAY107753.1knotted related homeobox3 /// KNOX1 domain containing protein-9e-19At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.
0.4352.80.91Zm.18561.1.A1_atCO517421hypothetical protein LOC100193602-1e-1At5g04660CYP77A4O.I.H.G.S.X.
0.4149.70.95Zm.4619.2.A1_a_atCK370334hypothetical protein LOC100273548-5e-29At4g31120SKB1 (SHK1 BINDING PROTEIN 1)O.I.H.G.S.X.
0.3742.30.94Zm.12069.2.S1_x_atAY112265.1--3e+0At4g32530vacuolar ATP synthase, putative / V-ATPase, putativeO.I.H.G.S.X.
0.3437.20.91Zm.6797.1.A1_atAI396390hypothetical protein LOC100279100-4e+0At3g15270SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)O.I.H.G.S.X.
0.3336.00.94Zm.1531.1.A1_atBM378607hypothetical protein LOC100191913-2e+1At5g54940eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.3233.40.93ZmAffx.507.1.A1_atAI691932--2e-1At3g14220GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3029.80.94Zm.12387.1.S1_atAW000286--2e+1Atmg01300-O.I.H.G.S.X.
0.2521.30.93Zm.354.2.S1_atU37428.1glossy1-5e-2At4g19150ankyrin repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.199.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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