Co-expression analysis

Gene ID Zm.3044.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g59835: unknown protein (HF=8e-1)
Module size 6 genes
NF 0.81
%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.9199.00.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6785.80.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.6785.80.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.5723.1.A1_atBM079835fiber protein Fb2-9e-3At4g33740unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.1.S1_atAW360661--2e-10At1g27900RNA helicase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.399.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.999.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.499.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.699.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.86127.1.S1_at, orthologous to the query gene, Zm.3044.2.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7991.3TaAffx.86127.1.S1_atAt1g59835--6e-1At5g51370F-box family proteinO.I.H.G.S.X.
0.7188.0TaAffx.1861.9.S1_x_atAt1g59835--3e+0At1g07040unknown proteinO.I.H.G.S.X.
0.6886.5TaAffx.97265.1.S1_x_atAt1g59835--7e+0At4g19620unknown proteinO.I.H.G.S.X.
0.6684.1TaAffx.84020.1.S1_atAt1g59835--2e-1At4g25410DNA binding / transcription factorO.I.H.G.S.X.
0.6583.9TaAffx.29362.1.S1_atAt1g59835--2e-1At1g78150unknown proteinO.I.H.G.S.X.
0.6383.1TaAffx.84244.1.S1_atAt1g59835--4e+0At5g43520DC1 domain-containing proteinO.I.H.G.S.X.
0.6282.3TaAffx.112844.1.S1_x_atAt1g59835--5e+0At4g35530phosphatidylinositolglycan-relatedO.I.H.G.S.X.
0.6182.0TaAffx.65606.1.S1_atAt1g59835--8e+0At2g42900-O.I.H.G.S.X.
0.6081.0Ta.24946.2.A1_a_atAt1g59835--5e+0At1g27490-O.I.H.G.S.X.
0.6081.0TaAffx.56527.1.S1_x_atAt1g59835--4e-3At5g11020ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.6081.0TaAffx.5820.1.S1_atAt1g59835--1e+0At5g49490AGL83 (AGAMOUS-LIKE 83)O.I.H.G.S.X.
0.5979.8TaAffx.25679.1.S1_atAt1g59835--1e+1At3g48675unknown proteinO.I.H.G.S.X.
0.5979.8TaAffx.109038.1.S1_atAt1g59835--3e-1At2g24240potassium channel tetramerisation domain-containing proteinO.I.H.G.S.X.
0.5979.8TaAffx.56527.1.S1_atAt1g59835--4e-3At5g11020ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.5779.2TaAffx.6094.1.S1_atAt1g59835--4e+0At3g17240mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)O.I.H.G.S.X.
0.5678.6TaAffx.109064.1.S1_atAt1g59835--3e+0At4g39220ATRER1AO.I.H.G.S.X.
0.5475.5TaAffx.29302.1.S1_atAt1g59835--3e+0At1g21870glucose-6-phosphate/phosphate translocator-relatedO.I.H.G.S.X.
0.5374.9TaAffx.111885.1.S1_atAt1g59835--4e+0At3g1678060S ribosomal protein L19 (RPL19B)O.I.H.G.S.X.
0.5374.9TaAffx.112770.1.S1_x_atAt1g59835--5e-1At4g35530phosphatidylinositolglycan-relatedO.I.H.G.S.X.
0.4969.7TaAffx.25679.1.S1_x_atAt1g59835--1e+1At3g48675unknown proteinO.I.H.G.S.X.
0.4969.7TaAffx.52994.1.S1_atAt1g59835--4e+0At5g28360ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)O.I.H.G.S.X.
0.4869.0TaAffx.120205.1.S1_atAt1g59835--4e+0At3g62110glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.4767.9Ta.17090.1.S1_atAt1g59835--3e+0At4g37710VQ motif-containing proteinO.I.H.G.S.X.
0.4767.9TaAffx.112844.3.S1_atAt1g59835--1e+0At5g26040HDA2O.I.H.G.S.X.
0.4464.5TaAffx.128541.51.S1_atAt1g59835--4e+0At3g20420RTL2 (RNASE THREE-LIKE PROTEIN 2)O.I.H.G.S.X.
0.4058.4TaAffx.65643.1.S1_atAt1g59835--4e+0At5g24610unknown proteinO.I.H.G.S.X.
0.3753.0Ta.24946.3.A1_x_atAt1g59835--5e+0At1g27490-O.I.H.G.S.X.
0.3549.8TaAffx.22.1.A1_atAt1g59835--9e-1At1g65210-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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