Co-expression analysis

Gene ID Zm.3044.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g59835: unknown protein (HF=8e-1)
Module size 6 genes
NF 0.81
%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.9199.00.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6785.80.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.6785.80.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.5723.1.A1_atBM079835fiber protein Fb2-9e-3At4g33740unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.1.S1_atAW360661--2e-10At1g27900RNA helicase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.399.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.999.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.499.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.699.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig23072_at, orthologous to the query gene, Zm.3044.2.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9398.7Contig23072_atAt1g59835--2e+0At2g18910hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4153.9Contig6353_atAt1g59835--3e+0At5g63230-O.I.H.G.S.X.
0.3950.5Contig23504_atAt1g59835--8e+0At5g36240zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3342.6Contig14836_atAt1g59835--2e+0At5g54760eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.3037.0Contig6587_s_atAt1g59835--1e-4At3g52470harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.2935.5Contig14353_atAt1g59835--9e-3At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.2528.9Contig20846_atAt1g59835--3e-6At4g36860zinc ion bindingO.I.H.G.S.X.
0.2427.2Contig23200_atAt1g59835--6e-6At3g20810transcription factor jumonji (jmjC) domain-containing proteinO.I.H.G.S.X.
0.2122.6HVSMEh0086G04r2_atAt1g59835--3e+0At4g03280PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)O.I.H.G.S.X.
0.2021.1Contig7980_atAt1g59835--5e-4At1g70670caleosin-related family proteinO.I.H.G.S.X.
0.1818.2Contig20893_atAt1g59835--4e-2At1g44542cyclase family proteinO.I.H.G.S.X.
0.1716.9HG01J06u_atAt1g59835--5e+0At4g24600unknown proteinO.I.H.G.S.X.
0.1615.3Contig18440_atAt1g59835--2e+0At3g56590hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1412.9Contig49_x_atAt1g59835--4e+0At3g05920heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.1412.9HT08K09u_atAt1g59835--4e+0At4g30820cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage