Co-expression analysis

Gene ID Zm.3044.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g27900: RNA helicase, putative (HF=2e-10)
Module size 6 genes
NF 0.74
%ile 94.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.3044.1.S1_atAW360661--2e-10At1g27900RNA helicase, putativeO.I.H.G.S.X.
0.7389.90.98Zm.7570.1.A1_atBM078988flavonol synthase-like protein-2e-2At3g502102-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.6785.80.98Zm.1423.1.A1_atCF047935RING zinc finger protein-like-2e-7At1g69330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6785.80.98Zm.3048.2.A1_atCF062150hypothetical protein LOC100277239-2e-5At2g31490unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.60.98Zm.15843.1.S1_atCD988927hypothetical protein LOC100275209-9e-1At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.8395.60.98Zm.526.1.S1_atAF242320.1hypothetical LOC541826-1e-3At5g14620DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.8094.00.98Zm.5687.1.A1_atAI629947--5e-4At1g30270CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)O.I.H.G.S.X.
0.6785.80.97Zm.16842.1.A1_atCF602571oxidoreductase-3e+0At1g66230MYB20 (myb domain protein 20)O.I.H.G.S.X.
0.6077.80.97Zm.975.1.A1_atCF016461hypothetical protein LOC100274388-3e-2At4g27660unknown proteinO.I.H.G.S.X.
0.5571.60.93Zm.17300.1.A1_a_atCK371224hypothetical protein LOC100275883-1e+0At5g10700aminoacyl-tRNA hydrolase/ protein tyrosine phosphataseO.I.H.G.S.X.
0.5571.60.97Zm.7100.1.S1_atCN071404hypothetical protein LOC100273549-2e+0At5g56230PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)O.I.H.G.S.X.
0.5571.60.98Zm.888.1.S1_atCK828040hypothetical protein LOC100216750-1e-7At1g08880H2AXAO.I.H.G.S.X.
0.5571.60.98Zm.3022.1.A1_atCF632756hypothetical protein LOC100275367-1e-2At5g42100ATBG_PAPO.I.H.G.S.X.
0.5369.10.97Zm.7146.1.A1_atCF00389930S ribosomal protein S17 /// hypothetical protein LOC100276656-3e-20At1g79850RPS17 (RIBOSOMAL PROTEIN S17)O.I.H.G.S.X.
0.5065.70.98Zm.6264.1.S1_atBG266134Hypothetical protein LOC100191870-4e-34At1g70300KUP6O.I.H.G.S.X.
0.5065.70.99Zm.5723.1.A1_atBM079835fiber protein Fb2-9e-3At4g33740unknown proteinO.I.H.G.S.X.
0.4658.40.97Zm.3657.1.A1_atBG874068--1e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.4455.70.96Zm.2273.1.S1_atAW330980hypothetical protein LOC100272874-7e-1At5g61230ankyrin repeat family proteinO.I.H.G.S.X.
0.4455.70.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.4455.70.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.4352.80.96Zm.5789.13.A1_a_atAI670670hypothetical protein LOC100192516-8e-7At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.4352.80.98Zm.4669.1.S1_atAI737897Growth-regulating factor 9-like-5e-5At3g52910AtGRF4 (GROWTH-REGULATING FACTOR 4)O.I.H.G.S.X.
0.4251.30.95Zm.5612.1.S1_atAY106400.1L-galactose dehydrogenase-7e-10At4g33670L-galactose dehydrogenase (L-GalDH)O.I.H.G.S.X.
0.4048.50.96Zm.4975.1.A1_atAI691922--9e-1At3g61900auxin-responsive family proteinO.I.H.G.S.X.
0.4048.50.97Zm.11326.1.S1_atCK371523hypothetical protein LOC100194219-2e+0At1g08630THA1 (Threonine Aldolase 1)O.I.H.G.S.X.
0.4048.50.98Zm.16513.1.A1_atCF634462hypothetical protein LOC100273404-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.3945.60.96Zm.2648.1.A1_atAY104745.1hypothetical protein LOC100216957-3e-3At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)O.I.H.G.S.X.
0.3844.20.95Zm.14324.3.A1_x_atAY105596.1hypothetical protein LOC100193273-3e-23At3g27060TSO2 (TSO meaning 'ugly' in Chinese)O.I.H.G.S.X.
0.3844.20.96Zm.477.1.A2_a_atAY109348.1brittle stalk-2-like protein 3-1e-15At5g60920COB (COBRA)O.I.H.G.S.X.
0.3742.30.96Zm.2371.1.S1_atBM073100--6e-1At4g08190Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.3742.30.97Zm.3286.1.A1_atBG265986--2e+0At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.3641.30.97Zm.1584.1.A1_atCO524456hypothetical protein LOC100273018-1e-10At4g28706pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.3538.90.93Zm.5758.1.A1_atAI649458--2e-13At3g63310glutamate bindingO.I.H.G.S.X.
0.3538.90.95Zm.15044.1.A1_atCF631612hypothetical protein LOC100193123-9e-18At1g08450CRT3 (CALRETICULIN 3)O.I.H.G.S.X.
0.3437.20.96Zm.265.1.A1_atU38791.1hypothetical protein LOC100279974-5e+0At5g62040brother of FT and TFL1 protein (BFT)O.I.H.G.S.X.
0.3336.00.96Zm.6696.1.S1_atAI374546hypothetical protein LOC100272810-6e-1At1g15900unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.14452.1.S1_atAY108380.1ethylene response element binding protein-1e-8At3g14230RAP2.2O.I.H.G.S.X.
0.3336.00.96Zm.10294.1.S1_atCD944058--2e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.3336.00.97Zm.12834.1.A1_atAI491262hypothetical protein LOC100272301-1e+1At4g36410UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)O.I.H.G.S.X.
0.3336.00.99Zm.3379.1.A1_atBM075631hypothetical protein LOC100272941-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.3233.40.95Zm.12948.1.S1_atCF056953hypothetical protein LOC100194368-3e-2At4g14960TUA6O.I.H.G.S.X.
0.3029.80.95Zm.3546.1.S1_atCA405247F-box domain containing protein-3e+0At5g10780-O.I.H.G.S.X.
0.2928.10.96Zm.5912.1.S1_atAY107926.1hypothetical protein LOC100191374-2e+0At3g24508-O.I.H.G.S.X.
0.2928.10.97Zm.17766.1.S1_atCK371550--3e+0At5g14730unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.16816.1.S1_a_atAY104056.1hypothetical protein LOC100216551-2e-25At3g54560HTA11O.I.H.G.S.X.
0.2724.60.97Zm.10756.1.S1_atCD975109--2e+0At1g58460unknown proteinO.I.H.G.S.X.
0.2724.60.96Zm.2653.1.A1_atBM073552--7e+0At4g37409unknown proteinO.I.H.G.S.X.
0.2622.70.97Zm.2652.1.A1_atAW066710--1e+1At5g18020auxin-responsive protein, putativeO.I.H.G.S.X.
0.2521.30.95Zm.10824.1.S1_atAY112360.1Hypothetical protein LOC100192632-6e-10At1g05170galactosyltransferase family proteinO.I.H.G.S.X.
0.2521.30.96Zm.10777.1.A1_atAI948165--6e+0At5g47890NADH-ubiquinone oxidoreductase B8 subunit, putativeO.I.H.G.S.X.
0.2521.30.97Zm.8152.1.S1_atBM073102hypothetical protein LOC100192746-1e-81At4g40040histone H3.2O.I.H.G.S.X.
0.2521.30.97Zm.7347.1.A1_atBM079051hypothetical protein LOC100278698-2e+0At5g51795Kin17 DNA-binding protein-relatedO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.896.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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