Co-expression analysis

Gene ID	Zm.3044.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g27900: RNA helicase, putative (HF=2e-10)
Module size	6 genes
NF	0.74
%ile	94.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.3044.1.S1_at	AW360661	-	-	2e-10	At1g27900	RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.7570.1.A1_at	BM078988	flavonol synthase-like protein	-	2e-2	At3g50210	2-oxoacid-dependent oxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1423.1.A1_at	CF047935	RING zinc finger protein-like	-	2e-7	At1g69330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.3048.2.A1_at	CF062150	hypothetical protein LOC100277239	-	2e-5	At2g31490	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.3044.2.A1_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.3044.2.S1_a_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208618.1.S1_at, orthologous to the query gene, Zm.3044.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	PtpAffx.208618.1.S1_at	At1g27900	hypothetical protein	-	1e-68	At1g27900	RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.201835.1.S1_at	At1g27900	hypothetical protein	-	2e-4	At1g77230	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.205041.1.S1_at	At1g27900	hypothetical protein	-	3e-61	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.103621.1.S1_at	At1g27900	hypothetical protein	-	6e-28	At2g41020	WW domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.5564.2.A1_at	At1g27900	-	-	5e-3	At5g51300	splicing factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.221150.1.S1_at	At1g27900	hypothetical protein	-	1e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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