Co-expression analysis

Gene ID Zm.3044.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g27900: RNA helicase, putative (HF=2e-10)
Module size 6 genes
NF 0.74
%ile 94.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.3044.1.S1_atAW360661--2e-10At1g27900RNA helicase, putativeO.I.H.G.S.X.
0.7389.90.98Zm.7570.1.A1_atBM078988flavonol synthase-like protein-2e-2At3g502102-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.6785.80.98Zm.1423.1.A1_atCF047935RING zinc finger protein-like-2e-7At1g69330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6785.80.98Zm.3048.2.A1_atCF062150hypothetical protein LOC100277239-2e-5At2g31490unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.896.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig23072_at, orthologous to the query gene, Zm.3044.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9398.7Contig23072_atAt1g27900--2e+0At2g18910hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4153.9Contig6353_atAt1g27900--3e+0At5g63230-O.I.H.G.S.X.
0.3950.5Contig23504_atAt1g27900--8e+0At5g36240zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3342.6Contig14836_atAt1g27900--2e+0At5g54760eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.3037.0Contig6587_s_atAt1g27900--1e-4At3g52470harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.2935.5Contig14353_atAt1g27900--9e-3At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.2528.9Contig20846_atAt1g27900--3e-6At4g36860zinc ion bindingO.I.H.G.S.X.
0.2427.2Contig23200_atAt1g27900--6e-6At3g20810transcription factor jumonji (jmjC) domain-containing proteinO.I.H.G.S.X.
0.2122.6HVSMEh0086G04r2_atAt1g27900--3e+0At4g03280PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)O.I.H.G.S.X.
0.2021.1Contig7980_atAt1g27900--5e-4At1g70670caleosin-related family proteinO.I.H.G.S.X.
0.1818.2Contig20893_atAt1g27900--4e-2At1g44542cyclase family proteinO.I.H.G.S.X.
0.1716.9HG01J06u_atAt1g27900--5e+0At4g24600unknown proteinO.I.H.G.S.X.
0.1615.3Contig18440_atAt1g27900--2e+0At3g56590hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1412.9Contig49_x_atAt1g27900--4e+0At3g05920heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.1412.9HT08K09u_atAt1g27900--4e+0At4g30820cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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