CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3044.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g27900: RNA helicase, putative (HF=2e-10)

Module size 6 genes

NF 0.74

%ile 94.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.3044.1.S1_at AW360661 - - 2e-10 At1g27900 RNA helicase, putative O.I. H.G. S.X.
0.73 89.9 0.98 Zm.7570.1.A1_at BM078988 flavonol synthase-like protein - 2e-2 At3g50210 2-oxoacid-dependent oxidase, putative O.I. H.G. S.X.
0.67 85.8 0.98 Zm.1423.1.A1_at CF047935 RING zinc finger protein-like - 2e-7 At1g69330 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.3048.2.A1_at CF062150 hypothetical protein LOC100277239 - 2e-5 At2g31490 unknown protein O.I. H.G. S.X.
0.50 65.7 0.99 Zm.3044.2.A1_at AI881563 - - 8e-1 At1g59835 unknown protein O.I. H.G. S.X.
0.50 65.7 0.99 Zm.3044.2.S1_a_at AI881563 - - 8e-1 At1g59835 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 96.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1 95.9 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1 94.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g27900, orthologous to the query gene, Zm.3044.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At1g27900 839683 RNA helicase, putative F:in 7 functions;P:biological_process unknown;C:cellular_component unknown;MBOVFPA O.I. H.G. S.X.
0.31 33.8 At4g15410 827210 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. H.G. S.X.
0.24 20.7 At5g06910 830582 ATJ6 (Arabidopsis J-domain protein 6) DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain. O.I. H.G. S.X.
0.15 7.8 At2g38950 818480 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO O.I. H.G. S.X.
0.10 3.4 At5g47010 834747 LBA1 (LOW-LEVEL BETA-AMYLASE 1) Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. O.I. H.G. S.X.
0.07 1.9 At2g19470 816466 ckl5 (Casein Kinase I-like 5) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPBFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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