Co-expression analysis

Gene ID	Zm.301.2.A1_x_at
Gene name	hypothetical protein LOC100276367
Homology with Arabidopsis	Similar to At2g34510: - (HF=4e-9)
Module size	20 genes
NF	0.12
%ile	7.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	0.85	Zm.301.2.A1_x_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.90	Zm.2702.3.A1_at	CA404120	-	-	3e-2	At5g14440	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.92	Zm.14974.1.A1_at	CF602682	hypothetical protein LOC100276645	-	2e+1	At5g42070	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.94	Zm.609.1.S1_at	AF326497.1	small basic membrane intrinsic protein1a	-	9e+0	At5g63270	nitrate-responsive NOI protein, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.91	Zm.19354.1.A1_at	CO532556	hypothetical protein LOC100279856	-	9e-1	At3g29050	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.91	Zm.9990.1.A1_at	AY105402.1	protein SEY1	-	6e-16	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.91	Zm.9812.1.A1_at	BM339721	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.92	Zm.18442.1.A1_at	CO532083	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.91	Zm.747.1.A1_at	CF627612	hypothetical protein LOC100191588	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.92	Zm.15487.1.S1_at	CD219309	MPK17-1 - putative MAPK	-	2e-51	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.91	Zm.4082.1.A1_at	AI834489	-	-	2e-1	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.93	Zm.7657.1.A1_at	BM338496	hypothetical protein LOC100278001	-	1e+0	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	Zm.8200.1.S1_at	BM379197	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	-	5e-1	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.90	Zm.4601.1.A1_at	BQ539109	-	-	2e+0	At4g21585	ENDO4 (endonuclease 4)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.92	Zm.3633.3.S1_x_at	AW067076	ascorbate peroxidase	-	6e-12	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.94	Zm.6949.1.S1_at	CF635740	-	-	8e-16	At4g31480	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.92	Zm.3223.3.A1_a_at	CD997659	hypothetical protein LOC100216794 /// ribosomal protein13	-	8e-23	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.93	Zm.6705.1.S1_at	CF349086	hypothetical protein LOC100276359	-	9e-3	At4g27595	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.92	Zm.6977.2.A1_at	CF624814	hypothetical protein LOC100192796 /// hypothetical protein LOC100276045 /// hypothetical protein LOC100277812 /// hypothetical protein LOC100278532	-	4e-19	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.90	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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