Co-expression analysis

Gene ID Zm.301.2.A1_at
Gene name hypothetical protein LOC100276367
Homology with ArabidopsisSimilar to At2g34510: - (HF=4e-9)
Module size 6 genes
NF 0.55
%ile 71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.301.2.A1_atCO521836hypothetical protein LOC100276367-4e-9At2g34510-O.I.H.G.S.X.
0.7188.20.99Zm.2234.1.S1_a_atCO526542hypothetical protein LOC100276749 /// hypothetical protein LOC100276758-2e+1At5g53486unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.10063.1.A1_atBM378869homeobox protein HD1-1e-12At4g32040KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)O.I.H.G.S.X.
0.5571.60.99Zm.4239.1.A1_atBM080569hypothetical protein LOC100193561-2e+0At5g04820OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)O.I.H.G.S.X.
0.3844.20.99Zm.4308.1.A1_atAY112093.1--1e-1At1g08390nucleic acid bindingO.I.H.G.S.X.
0.3131.60.99Zm.18237.1.S1_atCN845290mitochondrial carrier protein CGI-69-3e-6At4g27940mitochondrial substrate carrier family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5571.60.99ZmAffx.70.1.A1_atAI665164--8e-1At2g37780DC1 domain-containing proteinO.I.H.G.S.X.
0.5267.30.99Zm.3699.7.S1_a_atCK371636ribosomal proteinS6-1e-60At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.5065.70.99Zm.17370.1.S1_atCF637574epoxide hydrolase 2-7e-4At2g26750epoxide hydrolase, putativeO.I.H.G.S.X.
0.5065.70.99ZmAffx.1202.1.A1_atBE128848--5e-2At4g27350unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.10497.1.S1_atBQ485594--4e-1At1g52040MBP1 (MYROSINASE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.4759.90.98Zm.12054.1.A1_atBM416853--5e+0At1g04250AXR3 (AUXIN RESISTANT 3)O.I.H.G.S.X.
0.4759.90.99Zm.9785.1.S1_atCK371122hypothetical protein LOC100276267-1e-10At5g47320RPS19 (RIBOSOMAL PROTEIN S19)O.I.H.G.S.X.
0.4658.40.98Zm.4183.1.A1_atAI857198--4e-1At4g03113unknown proteinO.I.H.G.S.X.
0.4658.40.99Zm.3419.1.S1_atCF272935thioredoxin h2 protein-1e-1At2g35010ATO1 (Arabidopsis thioredoxin O1)O.I.H.G.S.X.
0.4455.70.99Zm.10329.1.S1_atBQ163458hypothetical protein LOC100279503-1e+0At5g20500glutaredoxin, putativeO.I.H.G.S.X.
0.4455.70.98Zm.869.2.A1_atAI711751Hypothetical protein LOC100192365-6e+0At5g15560unknown proteinO.I.H.G.S.X.
0.4048.50.99Zm.11993.1.A1_atBM382482--4e+0At3g26980MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)O.I.H.G.S.X.
0.4048.50.99Zm.7597.1.A1_atBM079101--7e-2At2g39705RTFL8 (ROTUNDIFOLIA LIKE 8)O.I.H.G.S.X.
0.4048.50.99Zm.5425.1.S1_a_atAY105598.1--1e+0At1g08010zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.3945.60.97Zm.1746.1.A1_a_atBG840562hypothetical protein LOC100278852-8e-8At2g30942unknown proteinO.I.H.G.S.X.
0.3844.20.98Zm.1057.1.A1_atAA979983--5e+0At5g65350histone H3O.I.H.G.S.X.
0.3844.20.99ZmAffx.788.1.A1_atAI759113--8e-1At4g33925unknown proteinO.I.H.G.S.X.
0.3641.30.98ZmAffx.836.1.A1_atAI770581--2e-1At3g24350SYP32 (SYNTAXIN OF PLANTS 32)O.I.H.G.S.X.
0.3641.30.99Zm.16146.1.A1_atCF632443hypothetical protein LOC100192115-3e+0At5g47630mtACP3 (mitochondrial acyl carrier protein 3)O.I.H.G.S.X.
0.3538.90.97Zm.16766.1.A1_atAY104512.1small nuclear ribonucleoprotein Sm D1-2e-21At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.3336.00.98Zm.9725.1.S1_atCF623812--3e-34At5g57015ckl12 (Casein Kinase I-like 12)O.I.H.G.S.X.
0.3336.00.98Zm.2269.1.S1_atCF631922--1e-7At5g51820PGM (PHOSPHOGLUCOMUTASE)O.I.H.G.S.X.
0.3336.00.99Zm.1787.1.S1_atAY103670.1hypothetical protein LOC100192020-2e-4At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.3131.60.98Zm.4230.1.S1_atCO523811--4e-5At1g17650GLYR2 (GLYOXYLATE REDUCTASE 2)O.I.H.G.S.X.
0.3131.60.99Zm.17217.1.A1_atCF633618Hypothetical protein LOC100194260-6e-1At2g40250GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3029.80.97ZmAffx.1097.1.A1_atAW120085--1e+1At5g25770unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.15526.1.A1_x_atCD434172structural constituent of ribosome-5e+0At5g24780VSP1 (VEGETATIVE STORAGE PROTEIN 1)O.I.H.G.S.X.
0.2928.10.98Zm.17227.1.S1_atCA405282hypothetical protein LOC100272437-6e-2At1g49740phospholipase C/ phosphoric diester hydrolaseO.I.H.G.S.X.
0.2928.10.99Zm.14325.1.S1_atAY104177.1hypothetical protein LOC100279850-2e-1At3g12550XH/XS domain-containing protein / XS zinc finger domain-containing proteinO.I.H.G.S.X.
0.2724.60.98Zm.10375.1.S1_atBQ703821--2e-17At2g35360ubiquitin family proteinO.I.H.G.S.X.
0.2724.60.99Zm.7060.1.A1_atCO530085--4e-1At3g10500anac053 (Arabidopsis NAC domain containing protein 53)O.I.H.G.S.X.
0.2521.30.96ZmAffx.122.1.S1_atAI665696Hypothetical protein LOC100217096-8e-1At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.2521.30.97Zm.13959.1.S1_atBG549495hypothetical protein LOC100193325-5e-1At4g30690translation initiation factor 3 (IF-3) family proteinO.I.H.G.S.X.
0.2521.30.98Zm.1808.1.A1_atAW498373Hypothetical protein LOC100191963-2e+0At2g34585unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320442protocol: mRNA - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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