Co-expression analysis

Gene ID	Zm.301.2.A1_at
Gene name	hypothetical protein LOC100276367
Homology with Arabidopsis	Similar to At2g34510: - (HF=4e-9)
Module size	6 genes
NF	0.55
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.99	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.99	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.10063.1.A1_at	BM378869	homeobox protein HD1	-	1e-12	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.4239.1.A1_at	BM080569	hypothetical protein LOC100193561	-	2e+0	At5g04820	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.4308.1.A1_at	AY112093.1	-	-	1e-1	At1g08390	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.99	Zm.18237.1.S1_at	CN845290	mitochondrial carrier protein CGI-69	-	3e-6	At4g27940	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1609590_s_at, orthologous to the query gene, Zm.301.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	1609590_s_at	At2g34510	hypothetical protein LOC100253669	-	3e-25	At2g34510	-	O.I.	H.G.	S.X.	Please select
0.81	93.7	1606707_at	At2g34510	hypothetical protein LOC100248187	-	2e-2	At2g41630	TFIIB (TRANSCRIPTION FACTOR II B)	O.I.	H.G.	S.X.	Please select
0.75	91.3	1611382_at	At2g34510	hypothetical protein LOC100264955	-	2e-6	At3g53850	-	O.I.	H.G.	S.X.	Please select
0.57	79.8	1622002_at	At2g34510	hypothetical protein LOC100264846	-	2e-1	At1g29951	CPuORF35 (Conserved peptide upstream open reading frame 35)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1611521_at	At2g34510	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1610422_at	At2g34510	hypothetical protein LOC100246625	-	5e-12	At3g51670	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1606662_at	At2g34510	similar to somatic embryogenesis receptor kinase	-	6e-59	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.49	69.3	1620990_at	At2g34510	hypothetical protein LOC100247103	-	1e-18	At1g19330	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620164_at	At2g34510	hypothetical protein LOC100263547	-	6e+0	At5g10160	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.	Please select
0.45	64.6	1618126_at	At2g34510	hypothetical protein LOC100261549	-	3e-8	At1g76660	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1613351_at	At2g34510	hypothetical protein LOC100252023	-	2e-1	At5g12970	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1611914_at	At2g34510	hypothetical protein LOC100261398	-	2e+0	At4g14660	NRPE7	O.I.	H.G.	S.X.	Please select
0.34	46.8	1622127_at	At2g34510	hypothetical LOC100262546	-	9e-1	At3g50070	CYCD3	O.I.	H.G.	S.X.	Please select
0.32	43.1	1620349_at	At2g34510	hypothetical protein LOC100263124	-	8e-7	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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