CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.301.2.A1_at

Gene name hypothetical protein LOC100276367
Homology with Arabidopsis Similar to At2g34510: - (HF=4e-9)

Module size 6 genes

NF 0.55

%ile 71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.99 Zm.301.2.A1_at CO521836 hypothetical protein LOC100276367 - 4e-9 At2g34510 - O.I. H.G. S.X.
0.71 88.2 0.99 Zm.2234.1.S1_a_at CO526542 hypothetical protein LOC100276749 /// hypothetical protein LOC100276758 - 2e+1 At5g53486 unknown protein O.I. H.G. S.X.
0.60 77.8 0.99 Zm.10063.1.A1_at BM378869 homeobox protein HD1 - 1e-12 At4g32040 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) O.I. H.G. S.X.
0.55 71.6 0.99 Zm.4239.1.A1_at BM080569 hypothetical protein LOC100193561 - 2e+0 At5g04820 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) O.I. H.G. S.X.
0.38 44.2 0.99 Zm.4308.1.A1_at AY112093.1 - - 1e-1 At1g08390 nucleic acid binding O.I. H.G. S.X.
0.31 31.6 0.99 Zm.18237.1.S1_at CN845290 mitochondrial carrier protein CGI-69 - 3e-6 At4g27940 mitochondrial substrate carrier family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1 98.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3 97.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5 92.6 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.63408.1.S1_at, orthologous to the query gene, Zm.301.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 59.3 GmaAffx.63408.1.S1_at At2g34510 - - 5e-31 At1g29980 - O.I. H.G. S.X.
0.24 30.9 Gma.13051.1.S1_at At2g34510 - - 3e-6 At5g56750 Ndr family protein O.I. H.G. S.X.
0.22 28.1 Gma.7749.1.A1_at At2g34510 - - 8e-9 At1g74910 ADP-glucose pyrophosphorylase family protein O.I. H.G. S.X.
0.19 23.7 Gma.9978.2.S1_at At2g34510 - - 6e-12 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) O.I. H.G. S.X.
0.17 21.2 GmaAffx.2892.2.S1_at At2g34510 - - 4e-1 At2g24400 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) O.I. H.G. S.X.
0.08 11.0 GmaAffx.1301.88.S1_s_at At2g34510 - - 4e-12 At5g15600 SP1L4 (SPIRAL1-LIKE4) O.I. H.G. S.X.
0.06 9.0 Gma.11254.1.S1_x_at At2g34510 - - 9e+0 At5g45040 cytochrome c6 (ATC6) O.I. H.G. S.X.
0.05 8.0 Gma.9091.2.S1_a_at At2g34510 - - 6e-130 At3g16950 LPD1 (LIPOAMIDE DEHYDROGENASE 1) O.I. H.G. S.X.
0.04 7.0 GmaAffx.69088.1.S1_s_at At2g34510 - - 2e-20 At1g10030 ERG28 (Arabidopsis homolog of yeast ergosterol28) O.I. H.G. S.X.
0.02 4.5 Gma.4917.2.S1_a_at At2g34510 - - 4e-6 At1g04940 TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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