Co-expression analysis

Gene ID Zm.3001.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g18760: ribosomal protein S6 family protein (HF=7e-1)
Module size 6 genes
NF 0.48
%ile 60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.95Zm.3001.1.A1_atCK826660--7e-1At3g18760ribosomal protein S6 family proteinO.I.H.G.S.X.
0.6077.80.96Zm.18376.1.A1_atAI615179hypothetical protein LOC100274438-2e-22At4g02630protein kinase family proteinO.I.H.G.S.X.
0.5976.10.96Zm.4768.1.A1_atAY107116.1hypothetical protein LOC100192636-5e-30At1g64550ATGCN3O.I.H.G.S.X.
0.5571.60.96Zm.4745.1.A1_atAI739741hypothetical protein LOC100194119-1e-3At3g55350unknown proteinO.I.H.G.S.X.
0.5065.70.95Zm.13669.1.S1_x_atAY107043.1--2e-1At3g26420ATRZ-1AO.I.H.G.S.X.
0.1811.60.96Zm.14536.1.A1_atAY187719.1SET domain protein SDG117-5e-1At1g55260lipid bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.50.95Zm.6242.2.A1_a_atCF037850INDETERMINATE-related protein 9-5e+0At3g60280UCC3 (UCLACYANIN 3)O.I.H.G.S.X.
0.5976.10.92Zm.14275.1.A1_atAY108619.1verprolin-1e+0At1g35435-O.I.H.G.S.X.
0.5369.10.95Zm.6743.1.S1_atAF494284.1empty pericarp 2-7e+0At4g15802-O.I.H.G.S.X.
0.4861.30.94Zm.7407.1.A1_a_atBM074289squalene monooxygenase-3e-7At4g37760SQE3 (squalene epoxidase 3)O.I.H.G.S.X.
0.4861.30.95Zm.18516.1.A1_x_atCO526437--2e+0At5g55570unknown proteinO.I.H.G.S.X.
0.4455.70.95Zm.5851.7.A1_a_atX85335.1ZEM3-7e-6At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.4455.70.96Zm.6402.3.S1_a_atAI770444DELLA protein DWARF8 /// dwarf plant9-8e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.4048.50.95Zm.8850.1.A1_atCO533203hypothetical protein LOC100272618-4e-2At3g17940aldose 1-epimerase family proteinO.I.H.G.S.X.
0.3538.90.94Zm.13899.1.S1_atAF099383.1R2R3MYB-domain protein-6e-2At4g37780MYB87 (MYB DOMAIN PROTEIN 87)O.I.H.G.S.X.
0.3336.00.93Zm.1838.1.A1_atCO526531hypothetical protein LOC100276173-8e+0At5g160103-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinO.I.H.G.S.X.
0.3336.00.94ZmAffx.891.1.S1_atAI770848--2e-1At3g43431unknown proteinO.I.H.G.S.X.
0.3336.00.94Zm.4529.1.A1_a_atCF624627lipid binding protein-4e-3At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3131.60.95Zm.2361.1.A1_atBM381388hypothetical protein LOC100191552-3e-17At1g5354017.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)O.I.H.G.S.X.
0.3131.60.96Zm.5851.9.S1_atAY105349.1hypothetical protein LOC100273737-4e+0At5g21970ubiquitin thiolesteraseO.I.H.G.S.X.
0.3131.60.96Zm.17549.2.A1_atAW267524hypothetical protein LOC100272329-3e-1At5g14160F-box family proteinO.I.H.G.S.X.
0.3029.80.90Zm.17509.1.S1_s_atCK394687low temperature viability protein-2e-1At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.2928.10.95Zm.2870.1.A1_atAW076473--1e-19At3g09840CDC48 (CELL DIVISION CYCLE 48)O.I.H.G.S.X.
0.2724.60.96Zm.18325.1.S1_atCO530408lipid binding protein-2e+0At5g02560HTA12O.I.H.G.S.X.
0.2622.70.94Zm.8931.1.A1_atCD975815hypothetical protein LOC100273121-3e-3At3g10410scpl49 (serine carboxypeptidase-like 49)O.I.H.G.S.X.
0.2622.70.93Zm.8419.1.A1_atCA403791hypothetical protein LOC100191238-7e-1At1g18210calcium-binding protein, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.298.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM206303Upper pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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