Co-expression analysis

Gene ID	Zm.3001.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g18760: ribosomal protein S6 family protein (HF=7e-1)
Module size	6 genes
NF	0.48
%ile	60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.3001.1.A1_at	CK826660	-	-	7e-1	At3g18760	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.18376.1.A1_at	AI615179	hypothetical protein LOC100274438	-	2e-22	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.96	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.4745.1.A1_at	AI739741	hypothetical protein LOC100194119	-	1e-3	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.13669.1.S1_x_at	AY107043.1	-	-	2e-1	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.96	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1621122_at, orthologous to the query gene, Zm.3001.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621122_at	At3g18760	-	-	4e-10	Atmg00300	-	O.I.	H.G.	S.X.	Please select
0.06	6.8	1616895_at	At3g18760	-	-	7e-3	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.05	6.0	1611259_at	At3g18760	hypothetical protein LOC100247271	-	2e-2	At2g26970	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1615765_x_at	At3g18760	-	-	7e-4	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1615419_s_at	At3g18760	hypothetical protein LOC100244646	-	1e-10	At2g33220	-	O.I.	H.G.	S.X.	Please select
0.00	0.5	1612072_at	At3g18760	-	-	3e-14	At2g16090	zinc finger protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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