Co-expression analysis

Gene ID	Zm.2997.1.S1_at
Gene name	REX1 DNA Repair family protein
Homology with Arabidopsis	Similar to At5g35525: unknown protein (HF=6e+0)
Module size	7 genes
NF	0.51
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	0.98	Zm.2997.1.S1_at	CD983066	REX1 DNA Repair family protein	-	6e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.13648.1.S1_at	AY107241.1	caleosin related protein	-	2e+0	At1g70670	caleosin-related family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.16573.1.A1_at	CA398704	-	-	2e+0	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.18791.1.A1_at	CF628695	-	-	2e-23	At4g30900	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.5826.1.A1_at	CA402658	-	-	9e-1	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage