Co-expression analysis

Gene ID	Zm.2994.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g18900: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=2e+1)
Module size	8 genes
NF	0.30
%ile	27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.95	Zm.2994.1.S1_at	AW146913	-	-	2e+1	At5g18900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.3084.1.A1_at	CA404291	hypothetical protein LOC100216830	-	9e-1	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.15490.1.A1_at	CD448845	subtilisin-chymotrypsin inhibitor CI-1B	-	4e+0	At5g38930	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.14054.1.S1_at	AY104122.1	hypothetical protein LOC100279504	-	8e-4	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.400.2.S1_at	AI677573	Pyruvate dehydrogenase (lipoamide) kinase1	-	3e-28	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.14760.1.A1_at	AY104289.1	Ubiquitin-conjugating enzyme E2	-	2e+0	At2g13980	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.96	Zm.2836.1.A1_at	AY112208.1	-	-	5e+0	At2g30280	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.3	96.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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