Co-expression analysis

Gene ID	Zm.2979.1.S1_at
Gene name	trafficking protein particle complex protein 2
Homology with Arabidopsis	Similar to At1g80500: - (HF=2e-12)
Module size	8 genes
NF	0.54
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	0.99	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.17310.1.A1_at	CK368488	-	-	7e+0	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.99	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.99	Zm.7176.1.A1_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.393.1.S1_at	U41466.1	glossy15	-	3e-7	At5g67180	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.16593.4.S1_at	CA401361	hypothetical protein LOC100194160	-	2e-4	At5g51840	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.3938.1.A1_at	CB350990	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.99	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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