Co-expression analysis

Gene ID	Zm.2977.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g40280: dehydration-responsive family protein (HF=1e-5)
Module size	6 genes
NF	0.26
%ile	21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.96	Zm.2977.1.A1_at	AW155840	-	-	1e-5	At2g40280	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.4655.1.S1_a_at	AY110133.1	-	-	5e+0	At5g05330	DNA binding	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	ZmAffx.1011.1.A1_at	AI881418	-	-	8e-1	At3g28190	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.9861.1.A1_at	BM341707	hypothetical protein LOC100275244	-	5e+0	At1g60060	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.13853.1.S1_at	AF272753.1	kinesin heavy chain	-	1e-14	At1g63640	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.97	Zm.11636.1.A1_at	BM379473	-	-	4e+0	At5g07160	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM202285	Mo17 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
3.3	94.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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