Co-expression analysis

Gene ID	Zm.2972.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g01810: - (HF=4e-3)
Module size	20 genes
NF	0.37
%ile	39.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	94.3	0.96	Zm.2972.1.A1_at	BM073882	-	-	4e-3	At3g01810	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.7276.1.S1_at	BI674107	FLU	-	1e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.17687.1.S1_at	CK370166	-	-	2e-1	At1g30972	-	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.3233.1.S1_at	BM379256	hypothetical protein LOC100273932	-	7e-1	At5g45630	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.6604.1.A1_at	AI467695	hypothetical protein LOC100280387	-	5e+0	At3g18160	peroxin-3 family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.2926.1.A1_at	CF630141	calmodulin-like protein 1	-	2e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.6569.9.A1_at	AW091447	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.10826.1.S1_at	BQ619411	hypothetical protein LOC100274249	-	8e-9	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.236.1.S1_at	AJ011615.1	SBP-domain protein2	-	1e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.13671.1.S1_at	CD001892	Hypothetical protein LOC100193899	-	5e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5290.2.S1_at	AY104608.1	-	-	5e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	ZmAffx.1025.1.A1_at	AI770423	-	-	8e-1	At2g25312	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.2792.1.S1_at	CD998237	hypothetical protein LOC100276061	-	8e-10	At5g59960	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.2233.1.A1_at	CO527146	-	-	3e-1	At3g56860	UBP1 interacting protein 2a (UBA2a)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.5926.1.S1_at	AY104624.1	-	-	1e-8	At4g16070	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.12590.1.S1_at	CD441032	-	-	2e-53	At5g16930	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.5976.2.S1_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.13409.1.S1_at	AF457934.1	3-oxoacyl-synthase III	-	6e-2	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.12821.1.A1_at	CA398688	-	-	1e+1	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.98	Zm.4878.1.A1_at	AW288995	hsc70-interacting protein	-	6e-8	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.5	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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