Co-expression analysis

Gene ID	Zm.2962.1.S1_at
Gene name	hypothetical protein LOC100272424
Homology with Arabidopsis	Similar to At4g27720: - (HF=7e-18)
Module size	7 genes
NF	0.42
%ile	48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.2962.1.S1_at	CF045165	hypothetical protein LOC100272424	-	7e-18	At4g27720	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.94	Zm.6053.1.A1_at	CF637098	-	-	5e+0	At5g26673	-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.93	Zm.6322.1.A1_at	CO522931	hypothetical protein LOC100279236	-	3e-8	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.93	Zm.6052.1.A1_at	AI759036	hypothetical protein LOC100191190	-	1e-57	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.16964.1.S1_at	AI948237	-	-	8e-3	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.5976.1.S1_a_at	AI673851	hypothetical protein LOC100279511 /// small nuclear ribonucleoprotein G	-	4e-5	At1g69370	CM3 (chorismate mutase 3)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.93	Zm.3699.1.S1_at	U92045.1	ribosomal proteinS6	-	1e-75	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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