Co-expression analysis

Gene ID Zm.2952.1.A1_a_at
Gene name hypothetical protein LOC100192920
Homology with ArabidopsisSimilar to At3g26680: SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) (HF=2e-3)
Module size 8 genes
NF 0.51
%ile 66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7087.00.99Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.6179.50.99Zm.405.1.A1_atAF037034.2hypothetical LOC541674-2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.5775.10.99Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.5571.60.99Zm.7122.1.A1_atAY111472.1--2e+0At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4658.40.99Zm.7121.2.S1_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.4352.80.99Zm.12225.1.A1_atCA403034DIP1-2e+0At3g14340unknown proteinO.I.H.G.S.X.
0.4048.50.99Zm.1269.1.A1_atBM350862--5e+0At5g53980ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)O.I.H.G.S.X.
0.2521.30.99Zm.7127.1.A1_atBM266653nonspecific lipid-transfer protein-8e+0At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.098.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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