Co-expression analysis

Gene ID	Zm.287.1.S1_at
Gene name	response regulator
Homology with Arabidopsis	Similar to At1g10470: ARR4 (RESPONSE REGULATOR 4) (HF=7e-5)
Module size	11 genes
NF	0.33
%ile	32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	0.94	Zm.287.1.S1_at	AB042260.1	response regulator	-	7e-5	At1g10470	ARR4 (RESPONSE REGULATOR 4)	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.95	Zm.1404.1.A1_at	AY108922.1	sugar transport protein 5	-	7e+0	At2g37585	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.12848.1.A1_at	AW037142	hypothetical protein LOC100273763	-	5e-1	At1g18780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.1993.1.S1_at	BQ539120	eyes absent-like protein	-	2e-1	At5g65230	AtMYB53 (myb domain protein 53)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.17843.2.A1_at	CD999046	hypothetical protein LOC100216964	-	6e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.5396.1.A1_at	AY112168.1	hypothetical protein LOC100216913	-	8e-5	At1g53645	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.13250.1.S1_at	CN844210	Zea mays MADS14	-	3e-2	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.11722.1.A1_at	AY110173.1	CUE domain containing protein	-	3e+0	At1g49310	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.95	Zm.13562.1.A1_at	AY108090.1	PCO099415 protein	-	6e-3	At1g54730	sugar transporter, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.0	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage