Co-expression analysis

Gene ID	Zm.2862.2.A1_a_at
Gene name	calnexin
Homology with Arabidopsis	Similar to At5g07340: calnexin, putative (HF=2e-44)
Module size	6 genes
NF	0.21
%ile	15.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.93	Zm.2862.2.A1_a_at	AY112482.1	calnexin	-	2e-44	At5g07340	calnexin, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.93	ZmAffx.192.1.A1_at	AI668442	-	-	2e-1	At1g51930	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.93	Zm.2422.1.A1_at	AY104192.1	pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit	-	6e-73	At1g12000	pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.93	Zm.6295.1.A1_at	AY107687.1	NADH-ubiquinone oxidoreductase B18 subunit	-	2e+0	At3g55670	-	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.94	Zm.2417.1.A1_at	BM338817	LSM7-like	-	2e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.93	Zm.15828.1.A1_at	AI711977	-	-	4e-29	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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