Co-expression analysis

Gene ID	Zm.2814.1.A1_at
Gene name	zinc finger C-x8-C-x5-C-x3-H type family protein
Homology with Arabidopsis	Similar to At5g08100: L-asparaginase / L-asparagine amidohydrolase (HF=3e+0)
Module size	6 genes
NF	0.26
%ile	21.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.94	Zm.2814.1.A1_at	CB833930	zinc finger C-x8-C-x5-C-x3-H type family protein	-	3e+0	At5g08100	L-asparaginase / L-asparagine amidohydrolase	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.7949.1.A1_at	BQ538368	hypothetical protein LOC100192737	-	2e+0	At2g28480	RNA binding	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.11379.1.A1_at	CB351163	-	-	5e+0	At2g29995	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.95	Zm.3630.2.S1_at	CO531431	36.4 kDa proline-rich protein	-	3e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.25317.1.S1_at, orthologous to the query gene, Zm.2814.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	TaAffx.25317.1.S1_at	At5g08100	-	-	1e+1	At5g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.17502.1.S1_at	At5g08100	-	-	3e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	TaAffx.24076.1.S1_at	At5g08100	-	-	3e+0	At2g34980	SETH1	O.I.	H.G.	S.X.	Please select
0.51	73.0	TaAffx.135182.1.S1_x_at	At5g08100	-	-	2e+1	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.110614.4.S1_at	At5g08100	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.112556.1.S1_at	At5g08100	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.105943.1.S1_at	At5g08100	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.3769.2.S1_at	At5g08100	-	-	1e+0	At5g44080	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.902.1.A1_at	At5g08100	-	-	4e+0	At4g29530	2,3-diketo-5-methylthio-1-phosphopentane phosphatase family	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.50318.1.S1_at	At5g08100	-	-	3e+0	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.20380.1.S1_at	At5g08100	-	-	9e-4	At3g58040	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.105981.1.S1_at	At5g08100	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.112720.1.S1_at	At5g08100	-	-	7e-5	At5g39580	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.15827.1.S1_at	At5g08100	-	-	4e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.9337.1.S1_at	At5g08100	-	-	4e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.24230.1.S1_at	At5g08100	-	-	3e+0	At5g27690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.20512.1.A1_at	At5g08100	-	-	3e-14	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.112440.1.S1_at	At5g08100	-	-	4e-1	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.30457.1.S1_at	At5g08100	-	-	2e-1	At2g02290	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.16453.1.S1_at	At5g08100	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.38399.1.S1_at	At5g08100	-	-	1e+0	At3g61930	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.19591.2.A1_a_at	At5g08100	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.135182.1.S1_at	At5g08100	-	-	2e+1	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.110665.1.S1_at	At5g08100	-	-	4e+0	At2g33250	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.26777.1.S1_at	At5g08100	-	-	7e-2	At3g45820	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.59475.1.S1_at	At5g08100	-	-	3e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.7371.1.S1_at	At5g08100	-	-	4e-6	At2g28305	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.108544.1.S1_x_at	At5g08100	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.9136.3.S1_a_at	At5g08100	-	-	1e+0	At3g23850	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.3861.1.S1_x_at	At5g08100	-	-	2e+0	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.3861.1.S1_at	At5g08100	-	-	2e+0	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.9611.1.S1_at	At5g08100	-	-	1e+0	At3g11110	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.9551.1.S1_at	At5g08100	-	-	1e+0	At2g36410	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.93245.1.A1_at	At5g08100	-	-	1e+0	At4g40011	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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