Co-expression analysis

Gene ID	Zm.2814.1.A1_at
Gene name	zinc finger C-x8-C-x5-C-x3-H type family protein
Homology with Arabidopsis	Similar to At5g08100: L-asparaginase / L-asparagine amidohydrolase (HF=3e+0)
Module size	6 genes
NF	0.26
%ile	21.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.94	Zm.2814.1.A1_at	CB833930	zinc finger C-x8-C-x5-C-x3-H type family protein	-	3e+0	At5g08100	L-asparaginase / L-asparagine amidohydrolase	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.7949.1.A1_at	BQ538368	hypothetical protein LOC100192737	-	2e+0	At2g28480	RNA binding	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.11379.1.A1_at	CB351163	-	-	5e+0	At2g29995	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.95	Zm.3630.2.S1_at	CO531431	36.4 kDa proline-rich protein	-	3e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.18367.1.A1_at, orthologous to the query gene, Zm.2814.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.18367.1.A1_at	At5g08100	-	-	1e+1	Atcg00050	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.8549.4.S1_at	At5g08100	hypothetical protein	-	7e-2	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	Ptp.4578.1.S1_at	At5g08100	hypothetical protein	-	5e-16	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.107905.1.S1_at	At5g08100	hypothetical protein	-	4e+0	Atcg00700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.200520.1.S1_at	At5g08100	hypothetical protein	-	2e-18	At1g80420	DNA repair protein, putative (XRCC1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.203961.1.S1_at	At5g08100	hypothetical protein	-	2e-3	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage