Co-expression analysis

Gene ID Zm.281.1.S1_s_at
Gene name hypothetical LOC542299
Homology with ArabidopsisSimilar to At5g55170: SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3) (HF=2e+0)
Module size 28 genes
NF 0.33
%ile 32.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.94Zm.281.1.S1_s_atU06831.1hypothetical LOC542299-2e+0At5g55170SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)O.I.H.G.S.X.
0.4658.40.95Zm.12735.1.A1_atAI491263hypothetical protein LOC100274318-6e-14At5g19760dicarboxylate/tricarboxylate carrier (DTC)O.I.H.G.S.X.
0.4455.70.97Zm.1042.1.A1_atAY105661.1--3e-1At2g25340ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)O.I.H.G.S.X.
0.4251.30.97Zm.10072.1.A1_atBM37894650S ribosomal protein L1-9e-19At3g63490ribosomal protein L1 family proteinO.I.H.G.S.X.
0.4149.70.96Zm.4815.1.A1_atAI746001--1e+0At5g14170CHC1O.I.H.G.S.X.
0.4149.70.96Zm.3867.1.S1_atCA399515hypothetical protein LOC100273968-1e-3At4g34910DEAD/DEAH box helicase, putative (RH16)O.I.H.G.S.X.
0.3742.30.97Zm.4776.2.A1_atCF026718pyruvate dehydrogenase E1 component alpha subunit-1e-39At1g59900AT-E1 ALPHAO.I.H.G.S.X.
0.3742.30.97Zm.5692.1.S1_atAI629972hypothetical protein LOC100276119-1e-12At3g12150unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.442.1.S1_atAF104924.2unconventional myosin heavy chain-5e-48At5g20490XIKO.I.H.G.S.X.
0.3641.30.97Zm.9183.1.A1_atBM331963--7e-2At1g77810galactosyltransferase family proteinO.I.H.G.S.X.
0.3538.90.95Zm.12770.1.S1_atCA398540translation initiation factor eIF-2B alpha subunit-1e-5At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.3538.90.97Zm.4044.1.A1_atAY109936.1hypothetical protein LOC100273897 /// hypothetical protein LOC100274738-5e+0At5g13780GCN5-related N-acetyltransferase, putativeO.I.H.G.S.X.
0.3538.90.97Zm.3780.1.S1_atAW438304low-molecular-weight cysteine-rich protein LCR69-9e-2At1g47317-O.I.H.G.S.X.
0.3336.00.97ZmAffx.1007.1.S1_atAI881371--1e+1At2g34570MEE21 (maternal effect embryo arrest 21)O.I.H.G.S.X.
0.3233.40.97Zm.13794.1.S1_atAY104961.1--7e-1At5g53280PDV1 (PLASTID DIVISION1)O.I.H.G.S.X.
0.3233.40.96Zm.10243.1.S1_atCF627054--1e+0At1g06320unknown proteinO.I.H.G.S.X.
0.3233.40.97Zm.6084.2.S1_atAY105635.1--5e-28At3g13235ubiquitin family proteinO.I.H.G.S.X.
0.3233.40.96Zm.6398.1.A1_s_atCA398579hypothetical protein LOC100192588-3e+0At2g43660glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.3233.40.97Zm.10125.2.A1_x_atBM380760cytidine/deoxycytidylate deaminase family protein-4e+0At2g46230-O.I.H.G.S.X.
0.2928.10.94Zm.2875.1.A1_atBG842372--8e+0At3g09380-O.I.H.G.S.X.
0.2828.10.96Zm.6459.1.S1_atCF647279hypothetical protein LOC100274304-2e-1At4g11430hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2622.70.97Zm.6057.1.S1_atCD437092glycine-rich protein 2b-5e-1At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.2318.60.96Zm.9485.1.A1_atBU050970hypothetical protein LOC100193159-2e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.2318.60.97Zm.6569.2.S1_a_atAY107413.1hypothetical protein LOC100276303-1e+0At3g59900ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)O.I.H.G.S.X.
0.2216.90.98Zm.5654.1.A1_atBG874013hypothetical protein LOC100280184-5e-1At5g61200-O.I.H.G.S.X.
0.2014.20.97Zm.6542.1.A1_atBG518200--4e-6At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)O.I.H.G.S.X.
0.1912.80.96Zm.1712.1.A1_atCF011399TBC domain containing protein-8e-5At5g54780RAB GTPase activatorO.I.H.G.S.X.
0.115.30.97Zm.12235.1.S1_atCF972364--7e+0At5g62980dihydroneopterin aldolase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.499.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.499.3GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
18.699.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.399.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.699.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
8.298.0GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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