Co-expression analysis

Gene ID Zm.2806.1.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At2g41660: MIZ1 (mizu-kussei 1) (HF=6e-1)
Module size 6 genes
NF 0.70
%ile 92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.98Zm.2806.1.A1_a_atAW067337--6e-1At2g41660MIZ1 (mizu-kussei 1)O.I.H.G.S.X.
0.9199.00.98ZmAffx.1020.1.A1_atAI881536--3e-7At1g75640leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.8094.00.98Zm.16532.2.A1_atAW33155460S ribosomal protein L18a-4e-69At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.5369.10.98Zm.384.1.A1_atAF001635.1physical impedance induced protein2-6e+0At5g03100F-box family proteinO.I.H.G.S.X.
0.5065.70.98Zm.9791.1.S1_atAY110405.1hypothetical protein LOC100216896-1e-78At3g5258040S ribosomal protein S14 (RPS14C)O.I.H.G.S.X.
0.5065.70.98Zm.5194.1.A1_atBM269267--1e-3At2g46070MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.97Zm.39.1.S1_s_atD87042.1Calcium-dependent protein kinase-1e-25At4g35310CPK5 (calmodulin-domain protein kinase 5)O.I.H.G.S.X.
0.6381.10.96Zm.1079.1.A1_x_atU08401.1hypothetical protein LOC100275493-1e+0At3g01500CA1 (CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.5976.10.98Zm.6996.1.A1_atCF054079--8e-1At2g28671unknown proteinO.I.H.G.S.X.
0.5369.10.97Zm.13851.1.A1_atAJ295132.1--7e-1At4g38980unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.4380.1.S1_atAY105814.1Hypothetical protein LOC100193145-5e-7At2g29140APUM3 (Arabidopsis Pumilio 3)O.I.H.G.S.X.
0.5065.70.98ZmAffx.101.1.A1_atAI665502--3e+0At5g24310ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)O.I.H.G.S.X.
0.4861.30.97Zm.9525.1.A1_atBM276820hypothetical protein LOC100274441-1e+0At5g11120unknown proteinO.I.H.G.S.X.
0.4759.90.97Zm.1945.2.A1_a_atAY106325.1Rho-related protein from plants 2 /// Rho-related protein from plants 9-3e-46At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.
0.4658.40.97Zm.9433.2.S1_atBG837727--4e-4At3g58600-O.I.H.G.S.X.
0.4455.70.97Zm.5797.2.A1_a_atBE050459ultraviolet-B-repressible protein-9e-5At2g06520PSBX (photosystem II subunit X)O.I.H.G.S.X.
0.4455.70.97Zm.2013.1.S1_a_atAW566101hypothetical protein LOC100274810-5e+0At4g06479nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.4455.70.98Zm.3728.2.A1_a_atCF628141heat shock factor-binding protein 1-7e-12At4g15802-O.I.H.G.S.X.
0.4455.70.98Zm.2676.1.A1_atAW066824--2e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.4455.70.98Zm.13351.2.A1_atAY110216.1Protein kinase-2e-13At5g55910D6PK (D6 PROTEIN KINASE)O.I.H.G.S.X.
0.4048.50.96Zm.19128.1.S1_atCO522067hypothetical protein LOC100273403-3e-3At5g46150LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinO.I.H.G.S.X.
0.4048.50.98Zm.4860.2.A1_atAI770577--3e+0At2g34140Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3945.60.97Zm.4164.2.A1_atCF627018--6e+0At4g19640ARA7O.I.H.G.S.X.
0.3945.60.97Zm.3171.1.A1_atAY104553.1RNA binding protein-4e-12At2g43970La domain-containing proteinO.I.H.G.S.X.
0.3844.20.97Zm.14586.1.A1_atAY103646.1IDP1625 protein-2e-22At2g43240nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.3641.30.97Zm.4138.2.A1_atAI881954--3e+0At1g09250transcription factorO.I.H.G.S.X.
0.3641.30.97Zm.1135.1.A1_atCA405172hypothetical protein LOC100276216-2e-8At5g05230ubiquitin-protein ligaseO.I.H.G.S.X.
0.3641.30.98Zm.17586.1.S1_atAW054131hypothetical protein LOC100193973-1e-27At1g22740RABG3BO.I.H.G.S.X.
0.3641.30.98Zm.348.1.A1_x_atU62751.1acidic ribosomal protein P3-1e-1At1g64620Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3336.00.97Zm.17858.1.S1_atAY111541.1hypothetical protein AY111541-2e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.3336.00.97Zm.17905.1.S1_atAY104787.1disulfide oxidoreductase/ monooxygenase-2e-6At1g12160flavin-containing monooxygenase family protein / FMO family proteinO.I.H.G.S.X.
0.3336.00.98Zm.3773.1.S1_atAY110209.1hypothetical protein LOC100193094-4e+0At4g18620-O.I.H.G.S.X.
0.3233.40.97Zm.13583.1.S1_atAY108161.1--5e-1At2g13980nucleic acid bindingO.I.H.G.S.X.
0.3233.40.96Zm.13750.1.A1_atAY105949.1cyclin-H-7e-8At5g27620CYCHO.I.H.G.S.X.
0.3131.60.96Zm.17252.1.A1_atCK369958--5e+0At4g08260protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3131.60.97Zm.6995.2.A1_atBG873820prefoldin subunit 3-7e-3At5g49510PDF3 (PREFOLDIN 3)O.I.H.G.S.X.
0.3131.60.97Zm.2463.1.S1_a_atAY108135.1hypothetical protein LOC100193981 /// hypothetical protein LOC100275076 /// hypothetical protein LOC100278476-6e-1At5g64110peroxidase, putativeO.I.H.G.S.X.
0.3131.60.98Zm.14497.9.S1_atBM382119--2e-15At5g59910HTB4O.I.H.G.S.X.
0.3029.80.97Zm.11393.1.A1_atCF629966hypothetical protein LOC100279372-2e-13At2g27100SE (SERRATE)O.I.H.G.S.X.
0.3029.80.97Zm.4834.1.S1_atCF602448hypothetical protein LOC100279345-4e+0At5g26890unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.6595.1.A1_atAI629743Hypothetical protein LOC100191605-4e-1At1g25375metallo-beta-lactamase family proteinO.I.H.G.S.X.
0.2928.10.97Zm.18272.1.A1_atCO523058--2e+0At1g54445-O.I.H.G.S.X.
0.2928.10.97Zm.4728.1.A1_atAI855200--2e+0At4g10850nodulin MtN3 family proteinO.I.H.G.S.X.
0.2928.10.97ZmAffx.1026.1.A1_atAI881620hypothetical protein LOC100193718-3e+0At5g27570WD-40 repeat family proteinO.I.H.G.S.X.
0.2928.10.98Zm.13016.1.A1_atCA403346hypothetical protein LOC100277160-2e+0At1g22160senescence-associated protein-relatedO.I.H.G.S.X.
0.2724.60.96Zm.6063.1.A1_a_atCD998449vacuolar proton pump homolog1-0At1g15690AVP1O.I.H.G.S.X.
0.2724.60.97ZmAffx.596.1.S1_atAI715024--8e-1At1g21940unknown proteinO.I.H.G.S.X.
0.2724.60.96Zm.18269.1.S1_atBM428973--4e+0At2g37240-O.I.H.G.S.X.
0.2724.60.96Zm.1980.1.A1_atCF630017hypothetical protein LOC100193990-2e+0At4g14410basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.4015.2.A1_atCD435491hypothetical protein LOC100192652-2e-15At3g02630acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.2724.60.97Zm.18267.1.A1_atAY222838.1--2e+0At5g59845gibberellin-regulated family proteinO.I.H.G.S.X.
0.2521.30.96Zm.11.1.S1_atL28712.1heat shock protein26-2e+0At1g07900LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)O.I.H.G.S.X.
0.2521.30.96Zm.12587.1.S1_s_atCF024578glycosyltransferase-3e-5At3g18170transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.2521.30.97Zm.14993.1.S1_atAY104383.1NAD-dependent isocitrate dehydrogenase-1e-47At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.2521.30.97Zm.15453.1.A1_atCD437208--3e-10At2g01440ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.2521.30.98Zm.5143.1.A1_atAY107731.1hypothetical protein LOC100276623-1e-1At1g74730unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.498.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.190.8GSM206304Upper pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage