Co-expression analysis

Gene ID	Zm.2806.1.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g41660: MIZ1 (mizu-kussei 1) (HF=6e-1)
Module size	6 genes
NF	0.70
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.98	Zm.2806.1.A1_a_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.16532.2.A1_at	AW331554	60S ribosomal protein L18a	-	4e-69	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.384.1.A1_at	AF001635.1	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.9791.1.S1_at	AY110405.1	hypothetical protein LOC100216896	-	1e-78	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5194.1.A1_at	BM269267	-	-	1e-3	At2g46070	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1618399_at, orthologous to the query gene, Zm.2806.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	88.6	1618399_at	At2g41660	-	-	2e-1	At2g33860	ETT (ETTIN)	O.I.	H.G.	S.X.	Please select
0.78	92.6	1612677_at	At2g41660	hypothetical protein LOC100252316	-	1e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	1607061_at	At2g41660	hypothetical protein LOC100251235	-	2e-20	At1g75060	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	1620170_at	At2g41660	hypothetical protein LOC100246815	-	1e-4	At4g36920	AP2 (APETALA 2)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1619167_at	At2g41660	hypothetical protein LOC100247828	-	7e-105	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select
0.56	79.4	1618643_at	At2g41660	hypothetical protein LOC100248183	-	7e-1	At3g09930	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1620442_at	At2g41660	hypothetical protein LOC100266848	-	1e-15	At3g02110	scpl25 (serine carboxypeptidase-like 25)	O.I.	H.G.	S.X.	Please select
0.45	64.6	1607417_at	At2g41660	hypothetical protein LOC100245522	-	1e-4	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1621574_at	At2g41660	hypothetical protein LOC100241803	-	3e-2	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612089_at	At2g41660	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1616016_at	At2g41660	hypothetical protein LOC100265943	-	4e-1	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615462_at	At2g41660	-	-	5e+0	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	1608603_at	At2g41660	hypothetical LOC100242108	-	3e-13	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1618871_at	At2g41660	hypothetical protein LOC100265907	-	3e-7	At4g38660	thaumatin, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	1617440_at	At2g41660	hypothetical protein LOC100247017	-	8e-2	At5g61470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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