CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.2806.1.A1_a_at

Gene name
Homology with Arabidopsis Similar to At2g41660: MIZ1 (mizu-kussei 1) (HF=6e-1)

Module size 6 genes

NF 0.70

%ile 92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.98 Zm.2806.1.A1_a_at AW067337 - - 6e-1 At2g41660 MIZ1 (mizu-kussei 1) O.I. H.G. S.X.
0.91 99.0 0.98 ZmAffx.1020.1.A1_at AI881536 - - 3e-7 At1g75640 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.80 94.0 0.98 Zm.16532.2.A1_at AW331554 60S ribosomal protein L18a - 4e-69 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
0.53 69.1 0.98 Zm.384.1.A1_at AF001635.1 physical impedance induced protein2 - 6e+0 At5g03100 F-box family protein O.I. H.G. S.X.
0.50 65.7 0.98 Zm.9791.1.S1_at AY110405.1 hypothetical protein LOC100216896 - 1e-78 At3g52580 40S ribosomal protein S14 (RPS14C) O.I. H.G. S.X.
0.50 65.7 0.98 Zm.5194.1.A1_at BM269267 - - 1e-3 At2g46070 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.1	0.98	Zm.2806.1.A1_a_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	O.I.	H.G.	S.X.
0.91	99.0	0.98	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.80	94.0	0.98	Zm.16532.2.A1_at	AW331554	60S ribosomal protein L18a	-	4e-69	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.
0.53	69.1	0.98	Zm.384.1.A1_at	AF001635.1	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.
0.50	65.7	0.98	Zm.9791.1.S1_at	AY110405.1	hypothetical protein LOC100216896	-	1e-78	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.
0.50	65.7	0.98	Zm.5194.1.A1_at	BM269267	-	-	1e-3	At2g46070	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1 90.8 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.212.1.A1_a_at, orthologous to the query gene, Zm.2806.1.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 97.7 Ptp.212.1.A1_a_at At2g41660 - - 1e+0 At4g26980 unknown protein O.I. H.G. S.X.
0.34 58.3 PtpAffx.28486.1.S1_at At2g41660 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.32 55.2 Ptp.6184.1.S1_at At2g41660 hypothetical protein - 1e-23 At4g09020 ISA3 (ISOAMYLASE 3) O.I. H.G. S.X.
0.27 47.1 PtpAffx.308.3.S1_a_at At2g41660 hypothetical protein - 6e-42 At1g50430 DWF5 (DWARF 5) O.I. H.G. S.X.
0.27 47.1 PtpAffx.2637.1.S1_at At2g41660 aquaporin, MIP family, SIP subfamily - 9e+0 At5g13181 unknown protein O.I. H.G. S.X.
0.26 45.2 PtpAffx.209099.1.S1_s_at At2g41660 hypothetical protein - 9e-13 At3g06440 galactosyltransferase family protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.149742.1.A1_at At2g41660 hypothetical protein - 1e+0 At1g04990 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.107388.2.A1_at At2g41660 hypothetical protein - 4e-19 At1g25570 leucine-rich repeat protein-related O.I. H.G. S.X.
0.22 38.3 Ptp.4891.2.A1_at At2g41660 hypothetical protein - 2e+0 At2g31953 LCR76 (Low-molecular-weight cysteine-rich 76) O.I. H.G. S.X.
0.22 38.3 PtpAffx.208072.1.S1_at At2g41660 SET domain-containing protein - 1e-17 At1g24610 SET domain-containing protein O.I. H.G. S.X.
0.19 32.7 PtpAffx.124715.1.S1_at At2g41660 hypothetical protein - 2e-1 At3g52300 ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) O.I. H.G. S.X.
0.18 30.8 PtpAffx.158977.1.S1_at At2g41660 - - 4e-26 At5g59250 sugar transporter family protein O.I. H.G. S.X.
0.18 30.8 PtpAffx.107388.2.A1_a_at At2g41660 hypothetical protein - 4e-19 At1g25570 leucine-rich repeat protein-related O.I. H.G. S.X.
0.18 30.8 PtpAffx.223244.1.S1_at At2g41660 - - 7e-32 At5g49950 embryogenesis-associated protein-related O.I. H.G. S.X.
0.17 29.1 PtpAffx.131828.1.S1_at At2g41660 hypothetical protein - 5e-17 At2g24220 ATPUP5 O.I. H.G. S.X.
0.16 26.9 PtpAffx.202921.1.S1_at At2g41660 hypothetical protein - 9e-15 At2g15690 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.147933.1.S1_at At2g41660 hypothetical protein - 2e+0 At5g54320 unknown protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.201755.1.S1_at At2g41660 hypothetical protein - 2e-99 At1g06490 ATGSL07 (glucan synthase-like 7) O.I. H.G. S.X.
0.15 25.3 PtpAffx.139160.1.S1_at At2g41660 hypothetical protein - 1e+0 At5g15960 KIN1 O.I. H.G. S.X.
0.15 25.3 PtpAffx.14602.1.S1_at At2g41660 thioredoxin y /// thioredoxin y - 1e-10 At1g76760 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) O.I. H.G. S.X.
0.14 23.5 PtpAffx.213869.1.S1_at At2g41660 hypothetical protein - 4e-89 At3g01540 DRH1 (DEAD BOX RNA HELICASE 1) O.I. H.G. S.X.
0.14 23.5 Ptp.1180.1.A1_at At2g41660 hypothetical protein - 2e-30 At5g42520 ATBPC6 O.I. H.G. S.X.
0.13 21.6 PtpAffx.63964.1.S1_at At2g41660 hypothetical protein - 2e+0 At1g52220 - O.I. H.G. S.X.
0.13 21.6 PtpAffx.579.1.S1_s_at At2g41660 hypothetical protein - 6e-149 At2g45290 transketolase, putative O.I. H.G. S.X.
0.12 19.6 PtpAffx.143538.1.S1_at At2g41660 hypothetical protein - 6e-12 At1g03310 isoamylase, putative / starch debranching enzyme, putative O.I. H.G. S.X.
0.12 19.6 PtpAffx.205649.1.S1_s_at At2g41660 hypothetical protein - 1e-1 At4g03380 - O.I. H.G. S.X.
0.10 16.3 PtpAffx.216471.1.S1_s_at At2g41660 hypothetical protein - 5e-35 At2g40860 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.145921.2.S1_a_at At2g41660 hypothetical protein - 1e-6 At3g60340 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.204774.1.S1_at At2g41660 hypothetical protein - 7e-9 At4g13160 unknown protein O.I. H.G. S.X.
0.07 11.6 PtpAffx.30325.2.S1_a_at At2g41660 hypothetical protein - 3e-11 At2g17695 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.88	97.7	Ptp.212.1.A1_a_at	At2g41660	-	-	1e+0	At4g26980	unknown protein	O.I.	H.G.	S.X.
0.34	58.3	PtpAffx.28486.1.S1_at	At2g41660	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.
0.32	55.2	Ptp.6184.1.S1_at	At2g41660	hypothetical protein	-	1e-23	At4g09020	ISA3 (ISOAMYLASE 3)	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.308.3.S1_a_at	At2g41660	hypothetical protein	-	6e-42	At1g50430	DWF5 (DWARF 5)	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.2637.1.S1_at	At2g41660	aquaporin, MIP family, SIP subfamily	-	9e+0	At5g13181	unknown protein	O.I.	H.G.	S.X.
0.26	45.2	PtpAffx.209099.1.S1_s_at	At2g41660	hypothetical protein	-	9e-13	At3g06440	galactosyltransferase family protein	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.149742.1.A1_at	At2g41660	hypothetical protein	-	1e+0	At1g04990	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.107388.2.A1_at	At2g41660	hypothetical protein	-	4e-19	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.
0.22	38.3	Ptp.4891.2.A1_at	At2g41660	hypothetical protein	-	2e+0	At2g31953	LCR76 (Low-molecular-weight cysteine-rich 76)	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.208072.1.S1_at	At2g41660	SET domain-containing protein	-	1e-17	At1g24610	SET domain-containing protein	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.124715.1.S1_at	At2g41660	hypothetical protein	-	2e-1	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.158977.1.S1_at	At2g41660	-	-	4e-26	At5g59250	sugar transporter family protein	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.107388.2.A1_a_at	At2g41660	hypothetical protein	-	4e-19	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.223244.1.S1_at	At2g41660	-	-	7e-32	At5g49950	embryogenesis-associated protein-related	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.131828.1.S1_at	At2g41660	hypothetical protein	-	5e-17	At2g24220	ATPUP5	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.202921.1.S1_at	At2g41660	hypothetical protein	-	9e-15	At2g15690	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.147933.1.S1_at	At2g41660	hypothetical protein	-	2e+0	At5g54320	unknown protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.201755.1.S1_at	At2g41660	hypothetical protein	-	2e-99	At1g06490	ATGSL07 (glucan synthase-like 7)	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.139160.1.S1_at	At2g41660	hypothetical protein	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.14602.1.S1_at	At2g41660	thioredoxin y /// thioredoxin y	-	1e-10	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.213869.1.S1_at	At2g41660	hypothetical protein	-	4e-89	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	O.I.	H.G.	S.X.
0.14	23.5	Ptp.1180.1.A1_at	At2g41660	hypothetical protein	-	2e-30	At5g42520	ATBPC6	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.63964.1.S1_at	At2g41660	hypothetical protein	-	2e+0	At1g52220	-	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.579.1.S1_s_at	At2g41660	hypothetical protein	-	6e-149	At2g45290	transketolase, putative	O.I.	H.G.	S.X.
0.12	19.6	PtpAffx.143538.1.S1_at	At2g41660	hypothetical protein	-	6e-12	At1g03310	isoamylase, putative / starch debranching enzyme, putative	O.I.	H.G.	S.X.
0.12	19.6	PtpAffx.205649.1.S1_s_at	At2g41660	hypothetical protein	-	1e-1	At4g03380	-	O.I.	H.G.	S.X.
0.10	16.3	PtpAffx.216471.1.S1_s_at	At2g41660	hypothetical protein	-	5e-35	At2g40860	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.145921.2.S1_a_at	At2g41660	hypothetical protein	-	1e-6	At3g60340	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.204774.1.S1_at	At2g41660	hypothetical protein	-	7e-9	At4g13160	unknown protein	O.I.	H.G.	S.X.
0.07	11.6	PtpAffx.30325.2.S1_a_at	At2g41660	hypothetical protein	-	3e-11	At2g17695	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Zm.2806.1.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g41660: MIZ1 (mizu-kussei 1) (HF=6e-1)
Module size	6 genes
NF	0.70
%ile	92.1

Co-expression analysis

Gene ID Zm.2806.1.A1_a_at Gene name Homology with ArabidopsisSimilar to At2g41660: MIZ1 (mizu-kussei 1) (HF=6e-1) Module size 6 genes NF 0.70 %ile 92.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_vinifera

Gene ID Zm.2806.1.A1_a_at

Gene name
Homology with Arabidopsis Similar to At2g41660: MIZ1 (mizu-kussei 1) (HF=6e-1)

Module size 6 genes

NF 0.70

%ile 92.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera