Co-expression analysis

Gene ID Zm.2769.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g12030: unknown protein (HF=5e-1)
Module size 7 genes
NF 0.18
%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.20.99Zm.2769.1.S1_atBM336917--5e-1At3g12030unknown proteinO.I.H.G.S.X.
0.4455.70.99ZmAffx.499.1.A1_atAI691724--1e+1At4g10910unknown proteinO.I.H.G.S.X.
0.4251.30.99Zm.5345.1.A1_atBM073914--4e+0At5g11290unknown proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.726.1.A1_atAI739956--3e+0At2g32360ubiquitin family proteinO.I.H.G.S.X.
0.2521.30.99ZmAffx.282.2.S1_atAI670245--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.136.80.99Zm.12605.1.S1_atBU050000hypothetical protein LOC100274683-1e+1At5g142003-isopropylmalate dehydrogenase, chloroplast, putativeO.I.H.G.S.X.
0.072.90.99Zm.4376.1.A1_atAI712238hypothetical protein LOC100275363-2e+0At2g23830vesicle-associated membrane protein, putative / VAMP, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.798.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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