Co-expression analysis

Gene ID Zm.2768.1.A1_at
Gene name Hypothetical protein LOC100193535
Homology with ArabidopsisSimilar to At5g04760: myb family transcription factor (HF=1e+0)
Module size 6 genes
NF 0.53
%ile 69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.93Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.6179.50.93Zm.19240.1.A1_atCF624777DNA binding protein-1e+0At5g54490PBP1 (PINOID-BINDING PROTEIN 1)O.I.H.G.S.X.
0.4455.70.93Zm.3498.1.A1_a_atCK367906metallothionein1-2e+0At5g64690neurofilament triplet H protein-relatedO.I.H.G.S.X.
0.4352.80.93Zm.17312.1.A1_atCK369501--5e+0At5g39700MYB89 (myb domain protein 89)O.I.H.G.S.X.
0.3641.30.95Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.2928.10.94Zm.12977.2.S1_atAI677017Hypothetical protein LOC100193319-5e-5At1g15370-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.10.87Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.6179.50.89Zm.5668.1.S1_atCO525286hypothetical protein LOC100193892-7e-4At2g43030ribosomal protein L3 family proteinO.I.H.G.S.X.
0.5571.60.92Zm.13483.1.S1_atCO528023Hypothetical protein LOC100192840-2e+0At3g29970germination protein-relatedO.I.H.G.S.X.
0.5369.10.88Zm.4619.3.A1_atAI737367--8e-1At3g53470unknown proteinO.I.H.G.S.X.
0.5065.70.94Zm.4255.1.A1_atAY112172.1--2e+0At5g23750remorin family proteinO.I.H.G.S.X.
0.4861.30.91ZmAffx.61.1.S1_atAI665105--9e-13At5g62840phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.4455.70.92Zm.17361.1.S1_atCK370908--5e-19At3g55320PGP20 (P-GLYCOPROTEIN 20)O.I.H.G.S.X.
0.4352.80.85Zm.8756.1.A1_atBM333012--4e+0At1g17860trypsin and protease inhibitor family protein / Kunitz family proteinO.I.H.G.S.X.
0.4048.50.81Zm.9651.1.A1_atBM334647--4e+0At3g03828unknown proteinO.I.H.G.S.X.
0.4048.50.94Zm.537.2.S1_atCF054696hypothetical protein LOC100273405-1e-46At4g02930elongation factor Tu, putative / EF-Tu, putativeO.I.H.G.S.X.
0.3844.20.82Zm.14318.1.A1_atAY104313.1--6e-5At5g08030glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.3844.20.84ZmAffx.415.1.S1_atAI670503--1e+1At5g67450AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)O.I.H.G.S.X.
0.3844.20.91Zm.1079.4.S1_x_atAY109373.1--2e-2At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3538.90.85Zm.11808.1.A1_x_atBM380907--3e+0At1g50490UBC20 (ubiquitin-conjugating enzyme 20)O.I.H.G.S.X.
0.3538.90.81ZmAffx.656.1.A1_atAI715084--8e-1At5g57310unknown proteinO.I.H.G.S.X.
0.3233.40.90Zm.13661.1.A1_atAY107142.1--2e+0At4g25710kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3131.60.88Zm.17754.1.A1_atCK826899--2e+0At4g17310unknown proteinO.I.H.G.S.X.
0.3131.60.94Zm.12511.1.S1_atAW062063hypothetical protein LOC100276976-5e+0At5g53110-O.I.H.G.S.X.
0.2928.10.91Zm.144.1.S1_x_atU10696.1metallothionein2-2e+1At5g38344transmembrane receptorO.I.H.G.S.X.
0.2928.10.92Zm.2940.1.A1_atAW360572--4e-5At1g56500haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2828.10.88Zm.17767.1.A1_atCK371577hypothetical protein LOC100191424-4e-1At2g14365LCR84 (Low-molecular-weight cysteine-rich 84)O.I.H.G.S.X.
0.2828.10.80ZmAffx.45.1.S1_atAI664925--8e-1At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2828.10.88Zm.11731.1.A1_atBM380291helix-loop-helix DNA-binding domain containing protein-5e-9At4g09180basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2724.60.89Zm.4140.1.S1_atBE552528hypothetical protein LOC100191980-2e-17At1g69790protein kinase, putativeO.I.H.G.S.X.
0.2622.70.91Zm.2887.1.A1_atCF041808hypothetical protein LOC100193083-6e-10At1g26940peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.2622.70.87Zm.19057.1.A1_atCO525209--4e-2At5g05280zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2622.70.87Zm.13415.1.A1_atAY112568.1hypothetical protein LOC100272915-6e+0At5g46650zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2521.30.87Zm.19055.1.A1_atCO520813Protein kinase catalytic domain-2e+0At5g20670unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.498.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320442protocol: mRNA - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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