CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.2768.1.A1_at

Gene name Hypothetical protein LOC100193535
Homology with Arabidopsis Similar to At5g04760: myb family transcription factor (HF=1e+0)

Module size 6 genes

NF 0.53

%ile 69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.93 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor O.I. H.G. S.X.
0.61 79.5 0.93 Zm.19240.1.A1_at CF624777 DNA binding protein - 1e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) O.I. H.G. S.X.
0.44 55.7 0.93 Zm.3498.1.A1_a_at CK367906 metallothionein1 - 2e+0 At5g64690 neurofilament triplet H protein-related O.I. H.G. S.X.
0.43 52.8 0.93 Zm.17312.1.A1_at CK369501 - - 5e+0 At5g39700 MYB89 (myb domain protein 89) O.I. H.G. S.X.
0.36 41.3 0.95 Zm.12936.1.A1_at AY108987.1 - - 7e-1 At3g21338 unknown protein O.I. H.G. S.X.
0.29 28.1 0.94 Zm.12977.2.S1_at AI677017 Hypothetical protein LOC100193319 - 5e-5 At1g15370 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.1	0.93	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	O.I.	H.G.	S.X.
0.61	79.5	0.93	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.44	55.7	0.93	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	O.I.	H.G.	S.X.
0.43	52.8	0.93	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.94	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1610689_at, orthologous to the query gene, Zm.2768.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 94.8 1610689_at At5g04760 hypothetical LOC100252368 - 8e-1 At1g63055 unknown protein O.I. H.G. S.X.
0.76 91.5 1607123_at At5g04760 - - 2e-9 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.73 90.8 1610065_at At5g04760 hypothetical protein LOC100260744 - 3e-1 At4g09775 - O.I. H.G. S.X.
0.64 84.7 1614257_at At5g04760 hypothetical protein LOC100250970 - 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.62 83.3 1609523_at At5g04760 hypothetical protein LOC100250310 - 7e-2 At2g28020 - O.I. H.G. S.X.
0.60 81.9 1617675_at At5g04760 hypothetical protein LOC100245692 - 3e-13 At5g24020 MIND O.I. H.G. S.X.
0.58 79.8 1614015_at At5g04760 - - 1e+0 At5g53220 unknown protein O.I. H.G. S.X.
0.56 79.4 1612453_at At5g04760 hypothetical protein LOC100248413 - 3e-46 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.56 79.4 1610900_at At5g04760 hypothetical LOC100244581 - 2e-1 At1g78480 prenyltransferase/squalene oxidase repeat-containing protein O.I. H.G. S.X.
0.55 77.3 1620148_at At5g04760 hypothetical protein LOC100252338 - 3e-17 At3g58830 haloacid dehalogenase (HAD) superfamily protein O.I. H.G. S.X.
0.54 75.7 1607315_at At5g04760 - - 4e+0 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) O.I. H.G. S.X.
0.52 73.9 1612940_at At5g04760 hypothetical protein LOC100244154 - 8e-9 At2g38025 - O.I. H.G. S.X.
0.52 73.9 1616874_at At5g04760 - - 2e-18 At5g58250 unknown protein O.I. H.G. S.X.
0.50 72.7 1612460_s_at At5g04760 hypothetical protein LOC100245544 - 4e-20 At2g38270 CXIP2 (CAX-INTERACTING PROTEIN 2) O.I. H.G. S.X.
0.49 69.3 1622017_at At5g04760 hypothetical protein LOC100241648 - 4e-34 At1g74910 ADP-glucose pyrophosphorylase family protein O.I. H.G. S.X.
0.48 68.8 1607285_s_at At5g04760 hypothetical protein LOC100262997 - 3e-54 At5g52520 OVA6 (OVULE ABORTION 6) O.I. H.G. S.X.
0.48 68.8 1618539_at At5g04760 hypothetical protein LOC100267633 - 1e-2 At2g41950 unknown protein O.I. H.G. S.X.
0.48 68.8 1614765_at At5g04760 hypothetical protein LOC100242287 - 1e-78 At3g59870 unknown protein O.I. H.G. S.X.
0.47 67.7 1619663_at At5g04760 hypothetical protein LOC100243552 - 4e+0 At4g10920 KELP O.I. H.G. S.X.
0.44 64.1 1608602_at At5g04760 hypothetical protein LOC100264906 - 4e-2 At3g09210 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) O.I. H.G. S.X.
0.43 61.5 1611482_at At5g04760 hypothetical LOC100250857 /// hypothetical protein LOC100262976 - 2e-2 At3g14080 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.
0.42 60.1 1611293_at At5g04760 hypothetical protein LOC100267754 - 3e-19 At2g43030 ribosomal protein L3 family protein O.I. H.G. S.X.
0.40 57.7 1616672_at At5g04760 hypothetical protein LOC100252527 - 2e-2 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.36 50.7 1607640_at At5g04760 hypothetical protein LOC100249595 - 1e-19 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.84	94.8	1610689_at	At5g04760	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	O.I.	H.G.	S.X.
0.76	91.5	1607123_at	At5g04760	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.
0.73	90.8	1610065_at	At5g04760	hypothetical protein LOC100260744	-	3e-1	At4g09775	-	O.I.	H.G.	S.X.
0.64	84.7	1614257_at	At5g04760	hypothetical protein LOC100250970	-	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.62	83.3	1609523_at	At5g04760	hypothetical protein LOC100250310	-	7e-2	At2g28020	-	O.I.	H.G.	S.X.
0.60	81.9	1617675_at	At5g04760	hypothetical protein LOC100245692	-	3e-13	At5g24020	MIND	O.I.	H.G.	S.X.
0.58	79.8	1614015_at	At5g04760	-	-	1e+0	At5g53220	unknown protein	O.I.	H.G.	S.X.
0.56	79.4	1612453_at	At5g04760	hypothetical protein LOC100248413	-	3e-46	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.
0.56	79.4	1610900_at	At5g04760	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.
0.55	77.3	1620148_at	At5g04760	hypothetical protein LOC100252338	-	3e-17	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.
0.54	75.7	1607315_at	At5g04760	-	-	4e+0	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.
0.52	73.9	1612940_at	At5g04760	hypothetical protein LOC100244154	-	8e-9	At2g38025	-	O.I.	H.G.	S.X.
0.52	73.9	1616874_at	At5g04760	-	-	2e-18	At5g58250	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	1612460_s_at	At5g04760	hypothetical protein LOC100245544	-	4e-20	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	O.I.	H.G.	S.X.
0.49	69.3	1622017_at	At5g04760	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.
0.48	68.8	1607285_s_at	At5g04760	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.
0.48	68.8	1618539_at	At5g04760	hypothetical protein LOC100267633	-	1e-2	At2g41950	unknown protein	O.I.	H.G.	S.X.
0.48	68.8	1614765_at	At5g04760	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	O.I.	H.G.	S.X.
0.47	67.7	1619663_at	At5g04760	hypothetical protein LOC100243552	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.
0.44	64.1	1608602_at	At5g04760	hypothetical protein LOC100264906	-	4e-2	At3g09210	PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)	O.I.	H.G.	S.X.
0.43	61.5	1611482_at	At5g04760	hypothetical LOC100250857 /// hypothetical protein LOC100262976	-	2e-2	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.
0.42	60.1	1611293_at	At5g04760	hypothetical protein LOC100267754	-	3e-19	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.
0.40	57.7	1616672_at	At5g04760	hypothetical protein LOC100252527	-	2e-2	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.
0.36	50.7	1607640_at	At5g04760	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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Gene ID	Zm.2768.1.A1_at
Gene name	Hypothetical protein LOC100193535
Homology with Arabidopsis	Similar to At5g04760: myb family transcription factor (HF=1e+0)
Module size	6 genes
NF	0.53
%ile	69.1

Co-expression analysis

Gene ID Zm.2768.1.A1_at Gene name Hypothetical protein LOC100193535 Homology with ArabidopsisSimilar to At5g04760: myb family transcription factor (HF=1e+0) Module size 6 genes NF 0.53 %ile 69.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivum

Gene ID Zm.2768.1.A1_at

Gene name Hypothetical protein LOC100193535
Homology with Arabidopsis Similar to At5g04760: myb family transcription factor (HF=1e+0)

Module size 6 genes

NF 0.53

%ile 69.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum