Co-expression analysis

Gene ID Zm.2707.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g05340: peroxidase, putative (HF=2e-1)
Module size 6 genes
NF 0.07
%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.93Zm.2707.1.S1_atBG842199--2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.2216.90.97Zm.13315.1.S1_atCA827618pairing protein meu13-like-9e-15At1g13330-O.I.H.G.S.X.
0.062.30.97Zm.15605.1.S1_atCA402349isopenicillin N epimerase-2e-2At3g62130epimerase-relatedO.I.H.G.S.X.
0.051.90.96Zm.17740.1.A1_atCK370696hypothetical protein LOC100277215-6e+0At3g29797-O.I.H.G.S.X.
0.031.10.97Zm.10375.1.S1_atBQ703821--2e-17At2g35360ubiquitin family proteinO.I.H.G.S.X.
0.031.10.97ZmAffx.988.1.S1_atAI834703--3e+0At5g50562unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3336.00.95Zm.4262.1.S1_atCF625817hypothetical protein LOC100279864-1e+0At1g65330PHE1 (PHERES1)O.I.H.G.S.X.
0.3131.60.97Zm.3313.2.A1_x_atBM072909--4e+0At2g27250CLV3 (CLAVATA3)O.I.H.G.S.X.
0.2928.10.97Zm.14039.2.S1_atAW179497gibberellin-regulated protein 1-2e+0At5g62860F-box family protein-relatedO.I.H.G.S.X.
0.2521.30.96--O.I.H.G.S.X.
0.2419.80.95Zm.6045.3.S1_atCO525120AN14-2e-13At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.2318.60.97Zm.4545.1.A1_atAI734703VAMP-like protein YKT62-9e-18At5g58060YKT61O.I.H.G.S.X.
0.2318.60.97Zm.2825.4.A1_atCF011665hypothetical protein LOC100192808-6e-41At1g22450COX6B (CYTOCHROME C OXIDASE 6B)O.I.H.G.S.X.
0.2115.50.95Zm.17311.1.S1_atCK369090hypothetical protein LOC100275390-1e+0At2g2772060S acidic ribosomal protein P2 (RPP2A)O.I.H.G.S.X.
0.2014.20.96Zm.6147.1.A1_x_atCK985534proliferation-associated protein 2G4-7e-26At3g51800ATG2O.I.H.G.S.X.
0.1912.80.95Zm.1621.1.S1_atAY107628.1hypothetical protein LOC100193676-2e-6At4g25640MATE efflux family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.1GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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