Co-expression analysis

Gene ID	Zm.2707.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g05340: peroxidase, putative (HF=2e-1)
Module size	6 genes
NF	0.07
%ile	3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.93	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.13315.1.S1_at	CA827618	pairing protein meu13-like	-	9e-15	At1g13330	-	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.97	Zm.15605.1.S1_at	CA402349	isopenicillin N epimerase	-	2e-2	At3g62130	epimerase-related	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.96	Zm.17740.1.A1_at	CK370696	hypothetical protein LOC100277215	-	6e+0	At3g29797	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.97	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.97	ZmAffx.988.1.S1_at	AI834703	-	-	3e+0	At5g50562	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1609321_at, orthologous to the query gene, Zm.2707.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1609321_at	At5g05340	hypothetical protein LOC100241916	-	7e-7	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1616929_at	At5g05340	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1621243_at	At5g05340	hypothetical protein LOC100257019	-	1e+0	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1617912_at	At5g05340	hypothetical protein LOC100259655	-	3e-5	At3g53990	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	1609603_s_at	At5g05340	hypothetical protein LOC100241051	-	1e-71	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1622320_at	At5g05340	-	-	2e+1	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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