Co-expression analysis

Gene ID	Zm.268.1.A1_at
Gene name	eukaryotic initiation factor 4A
Homology with Arabidopsis	Similar to At3g13920: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) (HF=1e-110)
Module size	14 genes
NF	0.77
%ile	96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.96	Zm.268.1.A1_at	U17979.1	eukaryotic initiation factor 4A	-	1e-110	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.93	99.3	0.97	Zm.3468.1.A1_at	BM337587	FYVE zinc finger family protein	-	1e-2	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.92	99.2	0.97	Zm.6139.2.A1_at	CF018619	methionyl-tRNA synthetase	-	1e-5	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.89	96.8	0.97	Zm.6467.1.A1_at	AI692044	-	-	2e+0	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.6367.1.S1_at	BM259420	-	-	3e-1	At4g26200	ACS7	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.6945.1.A1_at	AY104754.1	vacuolar proton pump3	-	2e-101	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.96	Zm.4882.2.S1_at	CK985806	-	-	9e+0	At3g62920	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.96	Zm.6316.1.A1_at	AI691367	-	-	2e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.97	Zm.16508.2.A1_at	CF018449	60S ribosomal protein L39 /// ribosomal protein L39	-	1e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.96	Zm.4746.1.A1_at	BG266536	-	-	3e-3	At1g58030	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.96	Zm.14071.1.A1_at	AY109092.1	hypothetical protein LOC100279213	-	2e-16	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.96	Zm.14806.1.A1_at	CF632779	hypothetical protein LOC100217201	-	1e-31	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.96	Zm.2176.1.S1_at	AY111425.1	-	-	4e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.7411.1.A1_at	BM072807	hypothetical protein LOC100277462	-	2e+0	At2g14390	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.0	97.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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