Co-expression analysis

Gene ID	Zm.2673.1.S1_at
Gene name	TLD family protein
Homology with Arabidopsis	Similar to At4g39870: - (HF=5e-2)
Module size	28 genes
NF	0.34
%ile	34.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.95	Zm.2673.1.S1_at	CA401457	TLD family protein	-	5e-2	At4g39870	-	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.97	Zm.16996.1.S1_at	CF972572	-	-	3e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	ZmAffx.96.1.A1_at	AI665410	hydroquinone glucosyltransferase	-	1e+1	At4g39130	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.611.1.A1_at	AF326499.1	small basic membrane intrinsic protein2a	-	6e-1	At2g15740	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.17506.1.A1_at	BM078795	hypothetical protein LOC100191925	-	1e+0	At5g65205	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.482.1.S1_at	AF073488.1	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.7517.1.A1_at	BM078773	hypothetical protein LOC100217133	-	2e-5	At4g36350	PAP25 (PURPLE ACID PHOSPHATASE 25)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.2685.1.S1_at	AF271384.1	indole-3-glycerol phosphate lyase1	-	5e-2	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.15768.1.A1_at	CD446659	hypothetical protein LOC100194013	-	3e-14	At2g21190	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	ZmAffx.716.1.S1_at	AI739804	transparent testa 12 protein	-	2e-1	At4g03240	FH (FRATAXIN HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.16024.1.S1_a_at	AF298769.1	40S ribosomal protein S24	-	1e-26	At3g04920	40S ribosomal protein S24 (RPS24A)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.9386.1.A1_at	BQ539064	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4655.1.A1_at	AY110133.1	-	-	5e+0	At5g05330	DNA binding	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.1398.1.S1_at	CF636316	-	-	2e+0	At1g05770	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.7809.1.A1_at	BM079983	hypothetical protein LOC100273081	-	2e-8	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.9288.1.A1_at	BM267822	-	-	9e+0	At5g03060	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.4240.1.A1_at	BM337929	hypothetical protein LOC100191812	-	1e-1	At5g47620	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.15450.1.A1_at	CK827099	-	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.15697.1.A1_at	CD441154	hypothetical protein LOC100191504	-	3e-2	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.12546.2.A1_a_at	AI770557	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.18465.1.A1_at	CO530071	-	-	1e+1	At4g09100	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.18260.1.S1_at	CN844955	-	-	3e-6	At1g75760	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.4536.1.S1_at	CF348908	kinesin heavy chain isolog	-	7e-4	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.1994.1.S1_at	CD442162	hypothetical protein LOC100193300	-	6e+0	At5g63070	40S ribosomal protein S15, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.18338.1.A1_at	BM074037	hypothetical protein LOC100193344	-	4e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.2823.1.A1_at	BI097694	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.98	Zm.16892.2.A1_at	CA403833	-	-	3e-6	At3g09710	IQD1 (IQ-DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.4791.1.A1_at	BM341427	splicing factor 3B subunit 5	-	2e-46	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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