Co-expression analysis

Gene ID	Zm.2635.1.A1_at
Gene name	hypothetical protein LOC100216945
Homology with Arabidopsis	Similar to At5g63040: unknown protein (HF=7e-9)
Module size	25 genes
NF	0.32
%ile	31.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	95.9	0.95	Zm.2635.1.A1_at	CF244162	hypothetical protein LOC100216945	-	7e-9	At5g63040	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.1942.1.A1_at	CF014864	-	-	7e-57	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.97	ZmAffx.720.1.S1_at	AI739909	-	-	2e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.5181.1.A1_at	CF030446	CK2 protein kinase alpha 2	-	1e-82	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.95	Zm.15685.2.S1_at	BG841369	-	-	5e+0	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.95	Zm.17748.1.S1_s_at	CK371075	protein kinase-like	-	2e+0	At1g80865	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.15523.1.A1_at	CD437396	threonine synthase	-	6e-5	At1g72810	threonine synthase, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.6045.4.S1_at	AY105966.1	hypothetical protein LOC100191419	-	5e-4	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.9535.1.A1_x_at	BM075999	-	-	5e+0	At5g56470	FAD-dependent oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.95	Zm.538.1.S1_at	AF256229.1	calcium exchanger1	-	1e-6	At3g51860	CAX3 (CATION EXCHANGER 3)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.469.1.A1_at	AF178952.1	voltage-dependent anion channel protein 2	-	2e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.17538.1.S1_at	CK370571	hypothetical protein LOC100273692	-	1e+0	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.8901.1.A1_at	AY107832.1	hypothetical protein LOC100192580	-	9e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.2776.1.A1_at	AW067203	asparagine synthase family protein	-	2e+0	At2g03667	asparagine synthase (glutamine-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.19096.1.A1_at	CO520840	-	-	4e-1	At1g25340	MYB116 (myb domain protein 116)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.8505.1.A1_at	AY107567.1	-	-	1e-4	At1g51870	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.5286.1.A1_at	CF632067	ubiquitin fusion degradation protein 1	-	2e-17	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.2750.1.S1_at	BU571720	hypothetical protein LOC100274502	-	7e-20	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.2169.1.A1_at	BM079581	-	-	2e+0	At3g10250	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.2110.1.A1_at	AW267573	-	-	5e-1	At3g45400	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.7399.1.S1_at	AY106106.1	hypothetical protein LOC100274088	-	1e-79	At3g07980	MAPKKK6	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.18301.1.A1_at	CO530719	Cyclin D5,2	-	9e-2	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.18651.1.A1_at	CO521320	hypothetical protein LOC100193552	-	2e+1	At4g18510	CLE2 (CLAVATA3/ESR-RELATED)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.2862.2.S1_at	AY112482.1	Calnexin	-	1e-61	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.15604.1.S1_at	CD433931	subtilisin-chymotrypsin inhibitor CI-1B	-	5e+0	At5g27440	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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