Co-expression analysis

Gene ID Zm.2574.1.A1_at
Gene name hypothetical protein LOC100274571
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=6e-2)
Module size 7 genes
NF 0.60
%ile 80.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.91Zm.2574.1.A1_atAY104948.1hypothetical protein LOC100274571-6e-2At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.8395.60.93Zm.1668.1.A1_atCF637028hypothetical protein LOC100193513-2e-3At2g25740ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.6785.80.93Zm.6659.1.A1_atBM075306pathogenesis related protein-5-6e-1At1g32763-O.I.H.G.S.X.
0.6179.50.94Zm.272.1.A1_atAB035644.1ferredoxin-7e-75At5g66190FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)O.I.H.G.S.X.
0.5369.10.93Zm.15266.1.S1_atBG841956--3e-1At4g16880disease resistance protein-relatedO.I.H.G.S.X.
0.4658.40.94Zm.17574.1.A1_atCF628805hypothetical protein LOC100216965-5e-8At2g02810UTR1 (UDP-GALACTOSE TRANSPORTER 1)O.I.H.G.S.X.
0.4048.50.93Zm.18324.1.A1_atCO520007aspartic proteinase nepenthesin-2-6e+0At3g11580DNA-binding protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM202310B73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.194.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.094.0GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.094.0GSM202315B73 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
2.993.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM202319Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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