Co-expression analysis

Gene ID	Zm.2520.1.A1_at
Gene name	hypothetical protein LOC100191754
Homology with Arabidopsis	Similar to At3g49680: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) (HF=5e-21)
Module size	6 genes
NF	0.56
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.96	Zm.5373.1.S1_at	BF728005	hypothetical protein LOC100276438	-	1e+0	At5g26170	WRKY50	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.5608.1.A1_at	AY107668.1	-	-	8e+0	At4g17650	aromatic-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.1961.1.A1_at	BM379423	Glutathione S-transferase12	-	2e+0	At4g26620	sucrase-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.16525.3.A1_x_at	AI738309	deoxy xylulose synthase 2	-	7e-44	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.4016.1.S1_at	CF244580	hypothetical protein LOC100193710	-	9e-1	At5g64720	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.1	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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