| Gene ID | Zm.2514.1.A1_at |
| Gene name | hypothetical protein LOC100273294 |
| Homology with Arabidopsis | Similar to At4g21450: vesicle-associated membrane family protein / VAMP family protein (HF=1e-8) |
| Module size | 6 genes |
| NF | 0.46 |
| %ile | 56.9 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.61 | 79.5 | 0.82 | Zm.2514.1.A1_at | CO524312 | hypothetical protein LOC100273294 | - | 1e-8 | At4g21450 | vesicle-associated membrane family protein / VAMP family protein | O.I. | H.G. | S.X. | |
| 0.59 | 76.1 | 0.81 | Zm.607.1.A1_at | AF326495.1 | plasma membrane integral protein ZmPIP2-6 | - | 2e-25 | At2g37170 | PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) | O.I. | H.G. | S.X. | |
| 0.55 | 71.6 | 0.86 | Zm.15439.1.A1_at | CD219438 | - | - | 3e-3 | At2g31820 | ankyrin repeat family protein | O.I. | H.G. | S.X. | |
| 0.50 | 65.7 | 0.87 | Zm.2000.1.A1_at | AY110879.1 | - | - | 4e+0 | At1g73885 | unknown protein | O.I. | H.G. | S.X. | |
| 0.50 | 65.7 | 0.90 | Zm.12050.1.A1_at | BM416823 | early flowering 4 | - | 1e+0 | At5g16030 | unknown protein | O.I. | H.G. | S.X. | |
| 0.19 | 12.8 | 0.84 | Zm.15298.1.A1_at | BQ538208 | - | - | 1e+0 | At5g63740 | zinc finger protein-related | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 7.8 | 97.9 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.5 | 97.1 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.4 | 97.0 | GSM320472 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.7 | 96.5 | GSM205367 | Mo17xB73 13 DAP endosperm tissue biological replicate 1 | GSE8275 | Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP | |
| 4.5 | 96.3 | GSM205365 | Mo17 13 DAP endosperm tissue biological replicate 1 | GSE8275 | Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP | |
| 4.2 | 96.0 | GSM320446 | protocol: mRNA - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.0 | 95.8 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.0 | 95.8 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.9 | 95.7 | GSM320439 | protocol: mRNA - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.8 | 95.5 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.80 | 92.5 | Contig6321_at | At4g21450 | - | - | 4e-11 | At4g21450 | vesicle-associated membrane family protein / VAMP family protein | O.I. | H.G. | S.X. | |
| 0.50 | 66.9 | EBma03_SQ001_K06_x_at | At4g21450 | - | - | 8e-17 | At3g44110 | ATJ3 | O.I. | H.G. | S.X. | |
| 0.40 | 53.1 | Contig6106_at | At4g21450 | - | - | 1e-2 | At1g55680 | WD-40 repeat family protein | O.I. | H.G. | S.X. | |
| 0.27 | 32.1 | Contig8124_at | At4g21450 | - | - | 7e-20 | At1g36370 | SHM7 (serine hydroxymethyltransferase 7) | O.I. | H.G. | S.X. | |
| 0.05 | 4.1 | Contig13104_at | At4g21450 | - | - | 1e-5 | At5g10460 | haloacid dehalogenase-like hydrolase family protein | O.I. | H.G. | S.X. | |
| 0.01 | 1.1 | Contig3098_at | At4g21450 | - | - | 3e-33 | At4g11150 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Oryza_sativa |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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