CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.2514.1.A1_at

Gene name hypothetical protein LOC100273294
Homology with Arabidopsis Similar to At4g21450: vesicle-associated membrane family protein / VAMP family protein (HF=1e-8)

Module size 6 genes

NF 0.46

%ile 56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 0.82 Zm.2514.1.A1_at CO524312 hypothetical protein LOC100273294 - 1e-8 At4g21450 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.59 76.1 0.81 Zm.607.1.A1_at AF326495.1 plasma membrane integral protein ZmPIP2-6 - 2e-25 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.55 71.6 0.86 Zm.15439.1.A1_at CD219438 - - 3e-3 At2g31820 ankyrin repeat family protein O.I. H.G. S.X.
0.50 65.7 0.87 Zm.2000.1.A1_at AY110879.1 - - 4e+0 At1g73885 unknown protein O.I. H.G. S.X.
0.50 65.7 0.90 Zm.12050.1.A1_at BM416823 early flowering 4 - 1e+0 At5g16030 unknown protein O.I. H.G. S.X.
0.19 12.8 0.84 Zm.15298.1.A1_at BQ538208 - - 1e+0 At5g63740 zinc finger protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320472 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.5 96.3 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.2 96.0 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9 95.7 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g21450, orthologous to the query gene, Zm.2514.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV O.I. H.G. S.X.
0.57 73.8 At4g05060 825848 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast;PMFO O.I. H.G. S.X.
0.40 50.8 At4g39910 830150 ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) Encodes a nuclear ubiquitin-specific protease. O.I. H.G. S.X.
0.25 22.6 At1g64040 842708 TOPP3 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. O.I. H.G. S.X.
0.18 11.4 At2g21240 816663 BPC4 (BASIC PENTACYSTEINE 4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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