Co-expression analysis

Gene ID Zm.2510.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g16920: ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) (HF=1e+0)
Module size 10 genes
NF 0.16
%ile 11.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.99Zm.2510.1.A1_atAW225293--1e+0At1g16920ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)O.I.H.G.S.X.
0.3641.30.99ZmAffx.882.1.S1_atAI770805--3e+0At1g18970GLP4 (GERMIN-LIKE PROTEIN 4)O.I.H.G.S.X.
0.3336.00.99Zm.9409.1.A1_atAY108164.1--3e-1At1g79850RPS17 (RIBOSOMAL PROTEIN S17)O.I.H.G.S.X.
0.2318.60.99ZmAffx.918.1.A1_atAI782957--8e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.158.60.99Zm.389.1.S1_atAF233881.1ribosome-inactivating protein-6e-1At5g06990unknown proteinO.I.H.G.S.X.
0.147.70.99Zm.9933.1.A1_atBM349388--2e-5At2g19160unknown proteinO.I.H.G.S.X.
0.136.80.99Zm.17696.1.A1_atBM073027--2e-3At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.
0.125.90.99Zm.16177.1.S1_atCF62770340S ribosomal protein S10-1e-13At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.083.40.99ZmAffx.871.1.A1_atAI770769--8e-1At1g69760unknown proteinO.I.H.G.S.X.
0.083.40.99Zm.616.1.S1_atAF326504.1tonoplast membrane integral protein ZmTIP3-1-2e+0At1g72080unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.299.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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