Co-expression analysis

Gene ID	Zm.2505.1.S1_at
Gene name	hypothetical protein LOC100216859
Homology with Arabidopsis	Similar to At1g44970: peroxidase, putative (HF=4e-5)
Module size	17 genes
NF	0.41
%ile	46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	0.95	Zm.2505.1.S1_at	BG841722	hypothetical protein LOC100216859	-	4e-5	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.143.3.S1_a_at	AI665623	-	-	3e+0	At3g12545	lipid transfer protein-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.16824.3.S1_at	CF634707	SAM domain family protein	-	3e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.5772.1.S1_at	AI649548	-	-	3e-85	At1g42430	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.5265.1.A1_at	CD441734	hypothetical protein LOC100191432	-	4e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.13198.2.A1_at	CA400950	-	-	4e+0	At3g43432	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.18109.1.S1_s_at	AI881274	transglutaminase	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.13534.1.A1_at	CF625575	nicotinate phosphoribosyltransferase-like protein	-	2e-5	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.9017.1.A1_at	BM338660	Hypothetical protein LOC100193460	-	2e+0	At1g64290	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.7937.1.A1_at	BM080506	plant viral-response family protein	-	1e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.561.1.A1_at	AF244701.1	glutathione transferase23	-	5e-1	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.16076.1.S1_at	CF244160	hypothetical protein LOC100191361	-	8e-4	At5g63220	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.7777.1.A1_at	BM079863	F-box domain containing protein	-	5e+0	At5g60964	-	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.13198.1.A1_x_at	CA403514	-	-	1e-1	At3g52270	ATP binding / RNA polymerase II transcription factor	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.2563.1.A1_at	BE638571	-	-	7e-3	At4g22440	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.3715.1.A1_at	AY107107.1	-	-	9e-56	At5g11200	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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