Co-expression analysis

Gene ID Zm.250.1.S1_at
Gene name basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097
Homology with ArabidopsisSimilar to At3g06000: leucine-rich repeat family protein (HF=5e+0)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.98Zm.250.1.S1_atCF007330basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097-5e+0At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.
0.6785.80.98Zm.16462.1.A1_atAY347711.1Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase-7e+0At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.6077.80.98Zm.4323.1.S1_atAY110219.1--2e+0At1g49150unknown proteinO.I.H.G.S.X.
0.6077.80.98Zm.8514.1.S1_atAY104758.1--5e+0At5g35525unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.6103.3.S1_atAI668289--8e-1At1g21010unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.6916.1.S1_atAW067358hypothetical protein LOC100273981-9e-13At5g66750CHR1 (CHROMATIN REMODELING 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5065.70.97Zm.128.1.S1_atX69152.1octopine synthase binding factor3-2e-1At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)O.I.H.G.S.X.
0.5065.70.98ZmAffx.707.1.A1_atAI738220transposon protein-8e-1At5g03310auxin-responsive family proteinO.I.H.G.S.X.
0.4658.40.98Zm.6915.1.S1_atAW256266hypothetical protein LOC100280116-5e-1At5g64160unknown proteinO.I.H.G.S.X.
0.4352.80.98Zm.3657.1.A1_s_atBG874068--1e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.4251.30.96Zm.17602.1.S1_atCF629187--1e+0At3g58230unknown proteinO.I.H.G.S.X.
0.4251.30.96Zm.12889.1.A1_atCK371449hypothetical protein LOC100193022-3e+0At3g22020-O.I.H.G.S.X.
0.4048.50.96Zm.8136.1.A1_atBM382533--5e+0At4g35900FDO.I.H.G.S.X.
0.4048.50.96Zm.5397.1.A1_atAI621755--3e+0At5g37055SEF (SERRATED LEAVES AND EARLY FLOWERING)O.I.H.G.S.X.
0.4048.50.97Zm.4124.1.A1_atAI855023hypothetical protein LOC100273075-3e-1At2g35710glycogenin glucosyltransferase (glycogenin)-relatedO.I.H.G.S.X.
0.4048.50.97Zm.3249.1.A1_atCF244824COV1-like protein-5e+0At5g08350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.4048.50.98Zm.7017.1.A1_atBM072990hypothetical protein LOC100272933-2e+0At1g31760SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3945.60.95Zm.2113.1.S1_atAW267577hypothetical protein LOC100277741-6e-6At3g19630radical SAM domain-containing proteinO.I.H.G.S.X.
0.3844.20.98Zm.12244.1.A1_atAY105130.1--4e-8At2g37500arginine biosynthesis protein ArgJ familyO.I.H.G.S.X.
0.3641.30.98Zm.716.1.A1_atCO521300hypothetical protein LOC100279404-5e+0At5g57535unknown proteinO.I.H.G.S.X.
0.3437.20.97Zm.584.4.A1_atAY104089.1pericarp color1-3e-8At4g38620MYB4O.I.H.G.S.X.
0.3336.00.97Zm.4302.1.A1_x_atAI834666protease inhibitor/seed storage/LTP family protein /// protease inhibitor/seed storage/LTP family protein /// PVR3-like protein-4e-1At1g72080unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.16533.1.S1_atAW46104560S ribosomal protein L37-6e-3At1g5230060S ribosomal protein L37 (RPL37B)O.I.H.G.S.X.
0.3336.00.98Zm.5964.1.S1_a_atAY109203.1zinc finger C-x8-C-x5-C-x3-H type family protein-6e-4At4g21610LOL2 (LSD ONE LIKE 2)O.I.H.G.S.X.
0.3233.40.97Zm.14507.1.A1_x_atCO524101glycosyl hydrolases family 16 protein-1e-2At1g11545xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.3233.40.97Zm.6173.1.A1_atCF011964IDP22 protein-2e+0At1g17615disease resistance protein (TIR-NBS class), putativeO.I.H.G.S.X.
0.3029.80.97Zm.10662.2.S1_atCF244281--2e+0At3g24516unknown proteinO.I.H.G.S.X.
0.2928.10.98Zm.4929.2.A1_a_atAI586452hypothetical protein LOC100192571-3e+0At5g28620protein kinase C-relatedO.I.H.G.S.X.
0.2928.10.98Zm.14497.1.A1_atU08226.1histone H2B-1e-26At1g07790HTB1O.I.H.G.S.X.
0.2724.60.95Zm.3998.1.S1_atAY108495.1hypothetical protein LOC100278863-1e-5At5g07500PEI1O.I.H.G.S.X.
0.2724.60.97Zm.3917.1.S1_atBE575130--7e+0At5g16090-O.I.H.G.S.X.
0.2724.60.96Zm.16694.1.S1_atZ14994.1--2e-11At5g53740unknown proteinO.I.H.G.S.X.
0.2724.60.98Zm.5592.1.S1_atAY111384.1--9e-2At5g66052unknown proteinO.I.H.G.S.X.
0.2724.60.98Zm.2157.7.S1_atCF019402ribosomal protein S11-1e-38At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.2622.70.97Zm.567.1.A1_atAF201459.1profilin 5-8e-60At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.
0.2521.30.95Zm.14094.1.S1_atCO519882S-glutathione dehydrogenase/class III alcohol dehydrogenase-3e-3At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.2521.30.98Zm.3743.2.S1_atAY109746.1--2e+0At5g04045Expressed proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM205367Mo17xB73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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