Co-expression analysis

Gene ID	Zm.250.1.S1_at
Gene name	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097
Homology with Arabidopsis	Similar to At3g06000: leucine-rich repeat family protein (HF=5e+0)
Module size	6 genes
NF	0.62
%ile	83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.250.1.S1_at	CF007330	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097	-	5e+0	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.4323.1.S1_at	AY110219.1	-	-	2e+0	At1g49150	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22223.1.S1_at, orthologous to the query gene, Zm.250.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.22223.1.S1_at	At3g06000	-	-	2e+0	At4g01535	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	TaAffx.36378.1.S1_at	At3g06000	-	-	6e+0	At2g24590	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.10515.1.S1_at	At3g06000	-	-	2e-2	At4g02420	lectin protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.82674.1.S1_at	At3g06000	-	-	8e+0	At3g27460	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.16251.2.S1_x_at	At3g06000	-	-	7e+0	At5g56070	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.16251.2.S1_a_at	At3g06000	-	-	7e+0	At5g56070	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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