Co-expression analysis

Gene ID Zm.250.1.S1_at
Gene name basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097
Homology with ArabidopsisSimilar to At3g06000: leucine-rich repeat family protein (HF=5e+0)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.98Zm.250.1.S1_atCF007330basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097-5e+0At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.
0.6785.80.98Zm.16462.1.A1_atAY347711.1Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase-7e+0At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.6077.80.98Zm.4323.1.S1_atAY110219.1--2e+0At1g49150unknown proteinO.I.H.G.S.X.
0.6077.80.98Zm.8514.1.S1_atAY104758.1--5e+0At5g35525unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.6103.3.S1_atAI668289--8e-1At1g21010unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.6916.1.S1_atAW067358hypothetical protein LOC100273981-9e-13At5g66750CHR1 (CHROMATIN REMODELING 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM205367Mo17xB73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.139172.2.S1_s_at, orthologous to the query gene, Zm.250.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7895.1PtpAffx.139172.2.S1_s_atAt3g06000hypothetical protein-2e-5At3g59690IQD13 (IQ-domain 13)O.I.H.G.S.X.
0.2747.1PtpAffx.26565.1.A1_atAt3g06000hypothetical protein-3e-6At2g32000DNA topoisomerase family proteinO.I.H.G.S.X.
0.2747.1PtpAffx.43487.1.A1_a_atAt3g06000--1e+0At5g38570F-box family proteinO.I.H.G.S.X.
0.2645.2PtpAffx.69245.1.A1_atAt3g06000--9e+0At5g37290armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.2543.6PtpAffx.120951.1.A1_atAt3g06000hypothetical protein-9e-1At2g30530unknown proteinO.I.H.G.S.X.
0.2238.3PtpAffx.98559.1.S1_atAt3g06000hypothetical protein-1e-13At1g22790unknown proteinO.I.H.G.S.X.
0.1932.7PtpAffx.201056.1.S1_s_atAt3g06000hypothetical protein-2e-13At1g24300-O.I.H.G.S.X.
0.1932.7PtpAffx.4127.1.A1_s_atAt3g06000--1e-3At5g38840forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.
0.1729.1PtpAffx.221478.1.S1_a_atAt3g06000hypothetical protein-2e-9At1g15780unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.105916.1.S1_atAt3g06000hypothetical protein-2e+0At3g15870oxidoreductaseO.I.H.G.S.X.
0.1626.9PtpAffx.140080.1.A1_atAt3g06000hypothetical protein-2e-3At1g49850zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1321.6PtpAffx.209746.1.S1_s_atAt3g06000hypothetical protein-2e-59At1g61690phosphoinositide bindingO.I.H.G.S.X.
0.1321.6Ptp.6452.1.S1_s_atAt3g06000hypothetical protein-4e-43At4g19110protein kinase, putativeO.I.H.G.S.X.
0.1118.1PtpAffx.70542.1.S1_s_atAt3g06000hypothetical protein-2e-31At3g55920peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.
0.1016.3Ptp.7.1.S1_atAt3g06000hypothetical protein-3e-33At2g31200ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)O.I.H.G.S.X.
0.069.8Ptp.3931.1.A1_a_atAt3g06000hypothetical protein-3e-33At1g49040SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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